Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 0.0e+00 1298.5 657 100.0
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 0.0e+00 1124.0 658 87.1
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 0.0e+00 1120.9 657 86.5
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1109.0 660 85.8
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 0.0e+00 1102.8 658 86.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1099.3 660 85.2
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 0.0e+00 1083.2 657 84.2
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.3e-301 1039.3 659 80.4
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 3.8e-301 1037.7 678 78.0
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.0e-298 1029.6 679 76.6
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 4.8e-296 1020.8 679 76.0
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.5e-294 1015.8 681 75.8
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 2.2e-293 1011.9 679 75.3
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 3.2e-292 1008.1 682 75.2
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.6e-291 1005.7 681 74.6
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.6e-291 1004.2 681 74.4
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.3e-290 1002.7 696 75.0
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 1.3e-290 1002.7 584 86.5
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.1e-290 1000.7 681 74.2
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 2.1e-288 995.3 667 74.7
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.5e-286 987.6 680 74.3
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.7e-285 985.7 679 74.7
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 8.4e-285 983.4 679 74.5
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 8.4e-285 983.4 679 74.5
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 8.4e-285 983.4 681 72.8
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 4.2e-284 981.1 678 73.6
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.1e-283 978.8 693 73.3
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.6e-283 977.6 649 75.5
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 7.9e-283 976.9 661 73.7
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.3e-282 975.3 681 74.6
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 3.0e-282 974.9 670 74.5
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.9e-282 974.5 680 73.4
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 5.7e-281 970.7 690 71.7
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 7.4e-281 970.3 658 75.1
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 9.6e-281 969.9 650 74.5
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 9.6e-281 969.9 688 73.1
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.1e-280 968.8 656 74.4
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 4.1e-279 964.5 671 73.3
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.5e-278 962.6 671 72.9
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 4.5e-278 961.1 670 73.3
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 6.5e-277 957.2 668 72.6
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 8.5e-277 956.8 679 72.6
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 5.5e-276 954.1 660 72.1
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.2e-275 953.0 646 74.8
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.1e-275 952.2 673 71.2
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.5e-273 945.3 608 78.8
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 5.7e-273 944.1 659 71.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 2.8e-272 941.8 636 74.1
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.8e-271 939.1 617 76.2
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.8e-271 939.1 651 72.8
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 6.9e-271 937.2 636 73.6
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 9.0e-271 936.8 656 72.0
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.2e-270 936.4 672 70.7
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.5e-270 934.5 637 73.2
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 5.9e-270 934.1 602 78.4
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 1.3e-269 932.9 636 73.1
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.7e-269 932.6 659 72.8
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-268 929.5 654 73.2
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 7.2e-268 927.2 630 72.9
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 7.9e-267 923.7 608 77.5
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.0e-266 921.8 653 71.5
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 5.1e-266 921.0 672 70.4
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.5e-265 919.5 604 78.5
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.5e-265 919.5 655 70.5
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.5e-265 919.5 661 70.5
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 3.1e-263 911.8 657 71.1
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 6.9e-263 910.6 654 70.6
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.2e-262 909.8 641 71.8
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.2e-262 909.8 657 70.6
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 3.4e-262 908.3 654 70.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 7.7e-262 907.1 659 70.4
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.7e-261 906.0 654 70.3
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.2e-261 905.6 604 76.3
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 6.5e-261 904.0 590 76.1
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.9e-260 902.5 636 72.0
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 2.5e-260 902.1 545 82.9
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.6e-259 898.3 645 69.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 4.7e-259 897.9 647 71.1
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.3e-257 891.7 636 71.1
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.3e-256 889.8 640 69.8
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.7e-256 889.4 637 70.5
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 3.7e-256 888.3 641 70.2
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 3.1e-255 885.2 641 69.9
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 7.0e-255 884.0 642 70.1
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.0e-253 877.9 641 69.6
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 5.5e-252 874.4 632 70.6
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.2e-251 873.2 685 65.8
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 3.6e-251 871.7 642 69.3
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.4e-250 869.8 607 71.7
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.1e-247 860.1 606 70.6
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.2e-244 848.2 607 72.0
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 6.1e-243 844.3 519 80.5
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 4.0e-242 841.6 742 60.0
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 4.1e-239 831.6 608 69.7
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 3.5e-238 828.6 655 67.6
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.2e-225 786.9 668 62.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 7.8e-222 774.2 658 61.7
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.8e-218 763.1 653 64.0
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.9e-215 753.1 473 80.3
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 3.0e-213 745.7 651 60.7
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.1e-211 739.6 777 51.0
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 8.9e-210 734.2 759 51.3
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.6e-209 732.6 775 50.2
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 4.9e-208 728.4 832 48.2
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.9e-204 716.5 842 46.4
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.4e-201 705.7 592 61.7
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 6.0e-198 694.9 459 75.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.2e-184 649.8 637 52.0
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-172 610.9 426 73.5
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.0e-166 588.6 522 60.2
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 7.2e-159 565.1 439 67.9
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 7.9e-158 561.6 549 53.0
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 8.8e-125 451.8 262 86.3
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 1.9e-119 434.1 303 70.6
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.0e-117 428.3 379 60.9
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.7e-105 387.1 335 60.0
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.7e-97 360.5 259 69.9
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.1e-90 336.7 215 76.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 3.4e-84 317.0 536 40.3
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.8e-84 316.2 339 51.3
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.3e-63 247.3 155 74.8
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.7e-41 174.5 135 65.2
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 9.1e-37 159.5 452 29.4
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.8e-35 154.1 140 55.7
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 4.7e-17 94.0 66 71.2
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 5.2e-16 90.5 77 58.4
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.4e-10 69.7 150 34.0
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.8e-06 58.2 48 58.3
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.8e-06 57.4 51 62.7


User provided reference genes

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