Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 5.8e-172 607.4 303 100.0
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.1e-161 572.4 303 95.7
Lj5g0013726 Lotus japonicus HOM05D041574 ORTHO05D236889 2.8e-118 429.1 229 94.8
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.4e-15 86.7 72 59.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 7.7e-15 85.5 72 58.3
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.0e-14 85.1 72 58.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.3e-14 84.7 72 56.9
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 6.5e-14 82.4 72 58.3
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 1.1e-13 81.6 72 54.2
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.4e-13 81.3 72 56.9
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.4e-13 81.3 72 56.9
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.9e-13 80.9 72 55.6
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.9e-13 80.9 72 56.9
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 1.9e-13 80.9 72 51.4
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 4.2e-13 79.7 85 51.8
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 4.2e-13 79.7 72 54.2
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 7.2e-13 79.0 72 54.2
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 7.2e-13 79.0 72 50.0
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 9.4e-13 78.6 72 54.2
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 9.4e-13 78.6 72 54.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 1.6e-12 77.8 75 50.7
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 2.1e-12 77.4 72 52.8
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 2.7e-12 77.0 72 51.4
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 2.7e-12 77.0 72 51.4
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 3.6e-12 76.6 72 51.4
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 3.6e-12 76.6 72 48.6
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 6.1e-12 75.9 70 50.0
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 6.1e-12 75.9 72 48.6
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 7.9e-12 75.5 72 50.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 7.9e-12 75.5 72 51.4
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.0e-11 75.1 72 51.4
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.4e-11 74.7 73 56.2
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.4e-11 74.7 75 48.0
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.8e-11 74.3 72 50.0
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.8e-11 74.3 70 51.4
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 47.2
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 50.0
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 48.6
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 50.0
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 3.0e-11 73.6 72 50.0
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 3.0e-11 73.6 72 48.6
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 3.9e-11 73.2 72 47.2
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 6.7e-11 72.4 88 46.6
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 6.7e-11 72.4 72 50.0
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 6.7e-11 72.4 83 44.6
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 8.8e-11 72.0 72 48.6
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 8.8e-11 72.0 75 49.3
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 8.8e-11 72.0 72 43.1
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.1e-10 71.6 75 49.3
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.1e-10 71.6 72 47.2
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.5e-10 71.2 72 47.2
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.5e-10 71.2 72 45.8
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.5e-10 71.2 70 51.4
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.0e-10 70.9 72 51.4
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 2.6e-10 70.5 132 38.6
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.3e-10 70.1 72 50.0
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.3e-10 70.1 72 50.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 3.3e-10 70.1 125 38.4
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 4.4e-10 69.7 75 42.7
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.4e-10 69.7 72 44.4
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 5.7e-10 69.3 72 50.0
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.7e-10 69.3 72 50.0
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 9.7e-10 68.6 70 48.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 9.7e-10 68.6 70 48.6
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 9.7e-10 68.6 77 46.8
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 1.3e-09 68.2 72 44.4
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.3e-09 68.2 72 44.4
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 1.3e-09 68.2 72 47.2
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 1.7e-09 67.8 72 43.1
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.7e-09 67.8 72 45.8
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.7e-09 67.8 72 47.2
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 2.2e-09 67.4 72 48.6
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 2.8e-09 67.0 73 43.8
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 3.7e-09 66.6 74 43.2
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 3.7e-09 66.6 72 43.1
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 4.8e-09 66.2 72 43.1
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 6.3e-09 65.9 72 43.1
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 8.2e-09 65.5 72 45.8
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 1.1e-08 65.1 72 47.2
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.4e-08 64.7 72 41.7
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 1.4e-08 64.7 72 41.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.4e-08 64.7 72 41.7
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 1.4e-08 64.7 72 43.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.4e-08 64.7 65 50.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.8e-08 64.3 54 53.7
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 2.4e-08 63.9 103 36.9
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.4e-08 63.9 89 41.6
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.4e-08 63.9 89 41.6
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 3.1e-08 63.5 72 43.1
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 4.1e-08 63.2 61 52.5
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 4.1e-08 63.2 72 41.7
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 4.1e-08 63.2 73 42.5
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 9.1e-08 62.0 72 40.3
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 9.1e-08 62.0 72 41.7
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 9.1e-08 62.0 75 40.0
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 1.2e-07 61.6 75 40.0
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 2.0e-07 60.8 75 40.0
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 2.6e-07 60.5 72 38.9
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 7.7e-07 58.9 125 34.4
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 1.0e-06 58.5 70 40.0
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.3e-06 58.2 72 40.3
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.3e-06 58.2 72 37.5
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 2.9e-06 57.0 70 40.0
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 5.0e-06 56.2 72 38.9
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 8.5e-06 55.5 72 45.8


User provided reference genes

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