Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 3.3e-234 814.7 419 100.0
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 5.6e-157 558.1 420 71.2
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.8e-156 555.8 421 72.0
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.5e-154 550.1 421 70.8
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 1.4e-152 543.5 423 70.2
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 3.5e-151 538.9 419 71.1
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.5e-146 523.5 423 67.4
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.8e-146 521.5 425 66.1
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 8.6e-142 507.7 370 72.7
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 4.3e-141 505.4 431 65.2
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 6.9e-139 498.0 425 63.1
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.8e-132 475.3 419 62.1
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.4e-131 473.8 429 63.2
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.6e-130 469.5 428 61.9
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.8e-129 465.7 428 61.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.2e-128 462.2 424 61.1
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 2.7e-127 459.5 423 61.2
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 6.0e-127 458.4 420 63.8
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 2.3e-126 456.4 422 59.2
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.0e-126 456.1 427 58.1
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 5.1e-126 455.3 422 59.7
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 3.3e-125 452.6 427 58.3
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.3e-125 452.6 425 58.6
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 9.6e-125 451.1 425 58.6
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 1.6e-124 450.3 488 54.7
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 8.1e-124 448.0 343 68.8
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.4e-123 447.2 427 59.5
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.2e-122 444.1 336 70.2
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-122 443.4 391 61.9
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 2.6e-122 443.0 420 58.6
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 2.6e-122 443.0 367 62.1
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.6e-122 443.0 424 58.7
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 4.9e-121 438.7 404 57.9
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 6.4e-121 438.3 425 58.4
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 8.4e-121 438.0 425 58.4
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.4e-120 436.4 406 59.6
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 5.5e-120 435.3 349 65.3
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.2e-119 434.1 428 56.5
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.6e-119 432.2 401 57.6
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.8e-118 430.3 441 55.6
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 5.1e-118 428.7 427 57.8
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 6.7e-118 428.3 399 59.6
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 8.7e-118 427.9 425 57.4
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.5e-117 427.2 424 56.6
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.5e-117 427.2 429 58.0
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 5.6e-117 425.2 421 61.5
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.3e-116 424.1 427 58.3
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.8e-114 415.2 453 54.3
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.6e-114 414.8 424 56.1
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 6.5e-113 411.8 420 55.2
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.9e-112 410.2 469 52.0
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 4.2e-112 409.1 425 55.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 3.5e-111 406.0 437 53.8
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 3.9e-110 402.5 421 52.5
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 4.3e-109 399.1 350 62.0
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 9.7e-109 397.9 420 53.6
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 3.1e-107 392.9 421 53.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.1e-107 392.5 417 55.9
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 5.3e-107 392.1 326 63.2
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 5.9e-106 388.7 366 55.5
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 7.6e-106 388.3 418 53.3
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 8.5e-105 384.8 421 52.7
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.9e-104 383.6 421 52.5
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.9e-104 383.6 422 53.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.9e-104 383.6 428 50.2
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.9e-104 383.6 423 53.7
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.5e-104 383.3 421 50.8
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 3.2e-104 382.9 422 52.8
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 3.2e-104 382.9 422 52.8
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 4.2e-104 382.5 421 52.3
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 9.3e-104 381.3 426 52.8
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.7e-103 379.8 354 57.6
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 7.9e-103 378.3 418 51.9
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.3e-102 377.5 419 52.0
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 3.0e-102 376.3 430 49.8
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 3.3e-101 372.9 449 49.4
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 4.3e-101 372.5 419 53.0
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 9.7e-101 371.3 420 50.2
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.4e-99 366.7 426 49.8
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 5.3e-99 365.5 369 56.1
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.0e-97 361.3 359 55.2
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.1e-96 357.8 431 48.7
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.0e-94 349.7 348 56.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 3.9e-94 349.4 386 51.6
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 5.1e-94 349.0 398 52.3
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 6.3e-92 342.0 424 49.5
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 9.1e-91 338.2 423 49.4
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.3e-89 334.3 416 47.1
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 8.5e-89 331.6 428 47.0
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.1e-87 327.0 424 47.2
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 7.4e-85 318.5 429 45.9
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.1e-83 312.8 424 46.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 3.2e-80 303.1 259 61.4
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 7.5e-77 292.0 322 50.0
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 9.4e-72 275.0 251 57.4
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-70 271.6 197 69.5
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.0e-66 257.3 336 44.3
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 7.2e-64 248.8 192 63.5
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.0e-61 240.7 169 70.4
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.8e-54 217.6 307 40.4
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 8.6e-49 198.7 323 39.6
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 8.6e-49 198.7 326 42.3
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.8e-46 191.0 360 33.9
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 9.5e-40 168.7 110 71.8
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.4e-38 164.9 178 55.1
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.5e-37 159.1 125 62.4
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.4e-36 156.0 133 60.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.4e-36 156.0 144 56.2
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-34 151.4 135 61.5
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-33 148.7 124 59.7
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 5.8e-29 132.9 225 40.4
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 8.4e-28 129.0 200 42.5
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.9e-27 127.9 127 52.8
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 2.1e-26 124.4 192 35.9
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 7.8e-26 122.5 166 47.0
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.5e-24 118.2 221 38.9
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-19 101.7 77 59.7
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.1e-19 99.4 144 44.4
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 4.6e-18 96.7 69 63.8
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.3e-17 94.4 269 27.9
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-16 90.9 61 67.2
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 2.4e-14 84.3 81 53.1
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 9.3e-11 72.4 79 48.1
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.8e-09 68.2 104 44.2
Psat7g019440 Pisum sativum HOM05D006199 ORTHO05D006558 3.1e-06 57.4 81 46.9
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 6.9e-06 56.2 85 43.5


User provided reference genes

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