Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 2.8e-28 127.9 64 100.0
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.9e-24 115.2 64 90.6
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.9e-24 115.2 64 90.6
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 5.6e-24 113.6 64 89.1
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 3.0e-22 107.8 64 82.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 6.8e-22 106.7 63 81.0
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 8.9e-22 106.3 64 81.2
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.6e-21 104.8 63 81.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 3.4e-21 104.4 64 79.7
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 3.4e-21 104.4 64 81.2
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 3.4e-21 104.4 64 79.7
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 5.7e-21 103.6 63 77.8
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 5.7e-21 103.6 63 79.4
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 5.7e-21 103.6 63 82.5
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 7.5e-21 103.2 63 81.0
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 7.5e-21 103.2 63 81.0
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 7.5e-21 103.2 64 76.6
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 9.8e-21 102.8 63 79.4
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 9.8e-21 102.8 63 79.4
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 9.8e-21 102.8 64 79.7
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 1.7e-20 102.1 61 83.6
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.7e-20 102.1 63 79.4
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 2.2e-20 101.7 60 83.3
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.2e-20 101.7 64 78.1
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.2e-20 101.7 64 78.1
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 77.8
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 3.7e-20 100.9 64 76.6
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 77.8
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 77.8
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.9e-20 100.5 63 77.8
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 6.4e-20 100.1 63 76.2
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 8.3e-20 99.8 64 76.6
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 8.3e-20 99.8 64 76.6
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 74.6
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 76.2
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 76.2
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 74.6
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 1.8e-19 98.6 63 76.2
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 2.4e-19 98.2 64 75.0
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 3.2e-19 97.8 62 77.4
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.1e-19 97.4 63 76.2
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 4.1e-19 97.4 60 80.0
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 76.2
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 5.4e-19 97.1 63 74.6
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 9.2e-19 96.3 57 78.9
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 9.2e-19 96.3 64 76.6
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.2e-18 95.9 63 76.2
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 1.6e-18 95.5 61 75.4
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 74.6
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 74.6
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 1.6e-18 95.5 64 73.4
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 2.7e-18 94.7 62 72.6
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 71.4
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 4.6e-18 94.0 62 72.6
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 73.0
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 5.9e-18 93.6 64 75.0
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.0e-17 91.3 63 69.8
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 3.9e-17 90.9 65 69.2
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 6.6e-17 90.1 56 80.4
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 1.9e-16 88.6 56 73.2
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.5e-16 88.2 52 82.7
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 3.3e-16 87.8 65 64.6
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.3e-16 87.4 63 65.1
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 5.6e-16 87.0 58 70.7
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 5.6e-16 87.0 63 68.3
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 7.3e-16 86.7 63 66.7
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 7.3e-16 86.7 58 74.1
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 9.5e-16 86.3 63 65.1
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 9.5e-16 86.3 55 76.4
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 9.5e-16 86.3 55 76.4
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 9.5e-16 86.3 81 56.8
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.6e-15 85.5 63 63.5
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.1e-15 85.1 63 66.7
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 2.8e-15 84.7 55 74.5
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 8.0e-15 83.2 63 65.1
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 8.0e-15 83.2 63 71.4
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 1.0e-14 82.8 57 68.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 60 66.7
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 2.3e-14 81.6 63 63.5
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 2.3e-14 81.6 63 61.9
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.3e-14 81.6 54 75.9
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.0e-14 80.9 57 68.4
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 5.2e-14 80.5 55 70.9
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 8.9e-14 79.7 63 61.9
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.5e-13 79.0 78 56.4
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 9.8e-13 76.3 63 58.7
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 2.2e-12 75.1 55 65.5
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 2.9e-12 74.7 55 61.8
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 2.9e-12 74.7 48 75.0
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 1.1e-11 72.8 55 65.5
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.1e-11 72.8 54 63.0
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 4.1e-11 70.9 57 63.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 5.4e-11 70.5 48 70.8
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 9.2e-11 69.7 54 61.1
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 3.0e-09 64.7 38 78.9
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 5.0e-09 63.9 111 37.8
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 8.6e-09 63.2 38 76.3
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.9e-08 62.0 46 65.2
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 3.6e-07 57.8 36 72.2
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 4.0e-06 54.3 63 44.4
Potri.014G100250 Populus trichocarpa HOM05D007265 ORTHO05D009118 5.2e-06 53.9 39 66.7
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.2e-06 53.9 38 81.6


User provided reference genes

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