Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 6.7e-102 374.0 188 100.0
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 9.7e-77 290.4 190 78.9
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 1.8e-75 286.2 188 79.3
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 9.1e-75 283.9 183 77.6
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 2.0e-74 282.7 185 80.5
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 1.3e-73 280.0 173 81.5
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 4.2e-72 275.0 173 79.2
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 2.0e-69 266.2 182 73.1
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 7.5e-69 264.2 168 76.8
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 6.3e-68 261.2 178 73.6
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 8.3e-68 260.8 178 77.5
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 8.3e-68 260.8 189 70.4
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 2.4e-67 259.2 181 72.9
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.0e-66 256.1 185 71.9
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 2.7e-66 255.8 179 74.3
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 5.9e-66 254.6 185 71.9
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 1.0e-65 253.8 188 70.2
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.0e-65 253.8 187 72.2
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 1.7e-65 253.1 182 72.5
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.7e-65 253.1 184 73.4
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 3.8e-65 251.9 176 71.6
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 3.8e-65 251.9 189 69.3
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 5.0e-65 251.5 184 71.2
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 6.5e-65 251.1 190 72.6
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 1.1e-64 250.4 166 75.9
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.9e-64 249.6 178 71.3
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.5e-64 249.2 184 69.6
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.5e-64 249.2 184 70.1
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 5.5e-64 248.1 187 70.6
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 5.5e-64 248.1 181 69.6
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 9.5e-64 247.3 185 68.6
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.2e-63 246.9 178 70.2
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 2.1e-63 246.1 166 74.7
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 4.7e-63 245.0 190 66.3
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 8.0e-63 244.2 166 75.9
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 1.0e-62 243.8 178 70.8
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 1.4e-62 243.4 186 71.0
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 1.4e-62 243.4 168 73.2
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 2.3e-62 242.7 179 70.4
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 2.3e-62 242.7 186 69.9
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 3.0e-62 242.3 186 66.7
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.0e-62 241.9 183 69.9
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 5.2e-62 241.5 170 71.2
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 6.8e-62 241.1 185 69.7
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 6.8e-62 241.1 180 68.9
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 8.8e-62 240.7 183 69.4
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 3.4e-61 238.8 186 67.7
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 5.7e-61 238.0 180 67.8
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 7.5e-61 237.7 163 73.6
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 1.7e-60 236.5 181 68.0
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.7e-60 236.5 145 80.7
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 8.3e-60 234.2 156 76.3
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 8.3e-60 234.2 156 76.3
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 1.4e-59 233.4 166 68.7
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 1.4e-59 233.4 161 73.9
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 1.8e-59 233.0 173 68.8
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 1.8e-59 233.0 179 64.2
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 4.1e-59 231.9 183 67.2
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 2.7e-58 229.2 174 70.1
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 3.5e-58 228.8 164 69.5
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 3.5e-58 228.8 178 69.1
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 5.9e-58 228.0 175 68.0
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 1.7e-57 226.5 159 69.8
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 3.8e-57 225.3 175 67.4
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 2.5e-56 222.6 161 67.1
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 2.5e-56 222.6 187 63.6
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 9.5e-56 220.7 148 72.3
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 6.1e-55 218.0 140 75.7
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.0e-54 217.2 186 62.9
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 2.3e-54 216.1 232 52.6
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 3.0e-54 215.7 177 61.6
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 3.0e-54 215.7 179 64.8
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 4.0e-54 215.3 148 70.3
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 4.0e-54 215.3 189 64.0
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 8.9e-54 214.2 148 69.6
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 8.9e-54 214.2 148 69.6
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 2.0e-53 213.0 148 68.9
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 2.0e-53 213.0 148 68.9
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 2.6e-53 212.6 181 59.7
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 2.6e-53 212.6 148 68.9
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 4.4e-53 211.8 186 59.1
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 1.3e-52 210.3 185 58.9
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 1.3e-52 210.3 144 73.6
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 2.2e-52 209.5 148 69.6
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 3.7e-52 208.8 154 70.1
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 3.2e-51 205.7 181 56.4
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 7.0e-51 204.5 136 76.5
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 4.6e-50 201.8 166 61.4
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 3.0e-49 199.1 152 65.1
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 3.9e-49 198.7 132 75.0
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 2.3e-46 189.5 133 72.2
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 2.2e-44 183.0 119 78.2
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 3.7e-44 182.2 118 76.3
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 5.6e-40 168.3 100 84.0
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 6.2e-39 164.9 187 54.5
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 6.8e-38 161.4 187 48.1
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 3.7e-36 155.6 172 55.2
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 7.1e-35 151.4 171 53.8
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 1.2e-34 150.6 195 47.2
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.6e-34 150.2 148 51.4
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 4.4e-29 132.1 84 75.0
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 2.2e-28 129.8 166 47.0
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.1e-26 123.2 79 72.2
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 7.3e-24 114.8 112 53.6
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 6.2e-23 111.7 171 45.6
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 5.2e-22 108.6 74 71.6
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 1.2e-21 107.5 170 37.6
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 3.2e-19 99.4 97 52.6
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 3.9e-17 92.4 138 39.9
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 3.1e-14 82.8 52 69.2
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 3.7e-07 59.3 40 72.5
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 6.2e-07 58.5 40 65.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.8e-06 57.0 55 52.7


User provided reference genes

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