Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 3862.0 1963 100.0
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3126.3 1976 81.6
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3108.9 1967 81.5
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 3103.5 1962 80.1
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 3064.6 1960 79.5
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 3050.8 1976 78.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 3016.5 1959 78.7
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 3008.4 1972 78.4
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 3006.1 1971 78.4
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2978.7 1982 77.1
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2887.8 2106 72.9
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2819.6 1943 76.1
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2499.2 1983 66.1
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2457.6 1995 65.4
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2456.8 1978 64.6
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2360.9 1904 64.9
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2353.2 1992 62.1
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2348.5 1978 62.7
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2347.4 1939 63.2
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2341.6 1994 61.9
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2329.7 1989 62.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2328.1 1983 61.5
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2320.0 1931 64.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2315.8 1997 62.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2309.6 1968 62.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2291.5 1996 61.2
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2284.2 2001 61.5
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2275.7 1974 60.9
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2271.5 1994 61.3
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2262.6 2071 58.9
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2256.5 2009 60.8
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2214.9 1898 60.9
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2213.7 1987 59.6
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2211.8 1971 59.6
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2206.8 1867 62.0
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2203.3 1972 59.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2186.4 2003 58.9
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2177.1 2066 57.1
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2171.4 1961 59.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2169.0 1912 61.4
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2100.5 1951 58.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2099.3 1945 57.7
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2095.5 1933 57.7
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2072.0 1929 57.3
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2060.0 1988 56.3
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2032.7 2062 54.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2030.4 1883 58.8
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2029.6 1983 56.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2029.2 2035 54.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2027.7 1969 56.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2018.8 2035 54.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2013.4 1948 55.7
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2009.6 1991 55.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1996.9 1910 57.2
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1989.2 2000 55.3
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1984.5 1935 56.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1979.5 1937 56.2
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1979.5 1934 56.2
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1976.4 1961 55.0
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1973.7 1915 56.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1964.5 1899 56.6
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1963.0 1916 56.2
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1956.0 1946 54.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1954.5 1912 56.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 1966 54.2
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1948.3 1945 55.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 1953 54.3
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1939.1 1942 55.5
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1931.8 1872 55.8
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1928.7 2109 51.0
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 1936 54.6
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1912.5 1953 53.7
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1902.5 1951 53.6
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1900.6 1985 53.4
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1889.4 1894 55.3
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1888.6 1926 54.6
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1877.8 1974 53.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1872.4 1942 53.7
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1856.6 1994 51.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1817.0 1938 52.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1761.9 1919 52.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1754.2 2125 48.4
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1587.8 1542 56.6
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1583.2 1612 54.2
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1496.9 1772 48.2
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1488.0 1358 60.5
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1477.2 1905 45.6
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1334.3 1064 64.2
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1195.3 2178 37.1
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1190.3 1933 39.0
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1158.3 2179 36.7
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1075.8 2122 35.3
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 4.2e-287 992.6 761 69.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.3e-282 975.7 793 64.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.1e-260 904.8 740 66.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.7e-238 829.7 709 62.1
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.6e-236 823.9 1157 43.0
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.4e-226 790.8 771 57.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.1e-226 790.4 1389 38.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 6.5e-224 782.7 2088 30.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.0e-220 771.2 799 54.6
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.2e-172 612.5 810 47.0
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.2e-118 430.3 408 52.0
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.5e-114 418.7 358 56.1
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 7.0e-93 347.4 220 78.6
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.8e-84 317.4 234 71.4
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.9e-80 303.9 494 40.3
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.3e-66 258.5 217 57.1
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.5e-58 233.4 341 40.8
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.4e-56 226.9 124 86.3
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.0e-51 210.7 277 46.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 5.1e-51 208.4 269 43.9
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 6.7e-43 181.4 264 44.7
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.9e-35 155.6 197 44.2
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.4e-32 147.1 80 90.0
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.6e-31 141.4 138 51.4
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.3e-30 140.6 122 63.9
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 4.9e-30 138.7 156 50.6
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.3e-22 114.0 80 72.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.7e-20 106.3 67 76.1
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.6e-20 105.5 121 52.9
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.9e-20 104.8 126 49.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 3.7e-17 95.9 88 60.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.4e-16 94.0 61 72.1
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 2.4e-16 93.2 106 55.7
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 5.3e-16 92.0 68 64.7
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 2.0e-15 90.1 121 49.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.9e-12 78.2 78 48.7
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 1.0e-11 77.8 73 54.8
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 6.9e-08 65.1 71 53.5


User provided reference genes

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