Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 4.4e-250 867.5 425 100.0
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 1.3e-185 653.3 430 74.2
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 2.7e-183 645.6 427 75.4
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 3.0e-182 642.1 431 73.5
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 4.0e-179 631.7 430 73.0
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 6.0e-175 617.8 430 70.7
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 6.2e-172 607.8 430 70.7
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 3.0e-158 562.4 436 66.5
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 3.9e-158 562.0 393 72.8
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.5e-157 559.3 436 66.1
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 3.2e-152 542.3 372 73.4
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 8.8e-142 507.7 342 72.8
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 5.5e-128 461.8 437 52.9
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.8e-121 439.1 422 53.1
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 2.5e-120 436.4 431 52.2
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 1.5e-117 427.2 431 51.0
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 2.6e-117 426.4 427 50.1
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 3.4e-117 426.0 426 51.2
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.8e-115 420.2 429 50.6
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 9.1e-115 417.9 437 50.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 8.6e-113 411.4 422 50.0
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 1.9e-112 410.2 406 51.0
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 2.1e-111 406.8 425 49.2
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 3.6e-111 406.0 440 50.2
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 8.0e-111 404.8 426 50.0
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.0e-110 404.4 425 49.9
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 6.8e-110 401.7 433 50.1
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 8.9e-110 401.4 438 49.3
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 8.3e-108 394.8 429 49.2
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.4e-107 393.3 436 49.1
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 3.1e-107 392.9 429 49.7
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 7.0e-107 391.7 443 47.6
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 9.2e-107 391.3 443 45.6
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 3.5e-106 389.4 464 45.0
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.0e-105 387.9 422 48.6
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 1.3e-105 387.5 429 49.0
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 6.6e-105 385.2 429 48.0
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 5.2e-102 375.6 421 48.2
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 1.2e-98 364.4 424 46.9
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 8.6e-97 358.2 423 44.4
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 1.2e-95 354.4 424 46.9
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 1.6e-95 354.0 391 48.1
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 3.6e-95 352.8 426 43.4
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 3.1e-94 349.7 424 42.5
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 5.8e-93 345.5 421 44.4
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 8.3e-92 341.7 425 44.2
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 4.6e-90 335.9 391 46.0
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 1.3e-89 334.3 428 41.8
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.3e-89 334.3 426 42.7
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 3.3e-88 329.7 373 44.8
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 1.2e-87 327.8 429 42.9
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 2.8e-87 326.6 428 41.6
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 1.8e-86 323.9 358 48.6
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 3.4e-85 319.7 449 40.5
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 9.9e-85 318.2 432 43.1
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 2.1e-82 310.5 365 45.2
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.0e-81 308.1 500 36.8
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 8.6e-81 305.1 429 38.7
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.2e-77 294.7 383 42.3
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.9e-72 277.3 308 48.7
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 5.6e-72 275.8 424 38.2
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 7.3e-72 275.4 375 41.6
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 7.3e-72 275.4 430 40.2
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.3e-65 253.8 458 35.2
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 1.1e-62 245.0 456 35.7
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 8.4e-60 235.3 444 35.1
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 6.0e-58 229.2 273 46.2
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 5.6e-48 196.1 259 39.8
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 4.8e-47 193.0 210 47.6
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.4e-46 191.4 219 48.4
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.9e-44 183.7 192 48.4
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 3.8e-44 183.3 259 39.0
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 7.1e-43 179.1 165 50.3
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 7.1e-43 179.1 326 35.0
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.1e-34 151.0 317 33.1
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 9.4e-27 125.6 256 32.4
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 2.6e-24 117.5 86 61.6
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 2.4e-22 110.9 160 41.2
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 6.5e-20 102.8 139 41.0
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 4.2e-19 100.1 80 58.8
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 8.0e-18 95.9 77 58.4
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 2.1e-10 71.2 181 29.8
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 3.4e-08 63.9 36 75.0
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 4.8e-07 60.1 130 28.5
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 3.1e-06 57.4 47 51.1
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 4.1e-06 57.0 37 67.6


User provided reference genes

Program Settings