Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.8e-82 309.3 163 100.0
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 2.6e-70 268.9 165 81.8
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 3.2e-68 261.9 165 80.0
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 5.7e-65 251.1 165 75.8
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.3e-64 250.0 166 78.3
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 8.2e-64 247.3 165 75.8
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.4e-63 246.5 166 75.9
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 1.8e-63 246.1 166 79.5
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 2.4e-63 245.7 166 75.3
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 6.9e-63 244.2 166 79.5
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 6.9e-63 244.2 165 80.0
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 1.3e-61 240.0 163 79.1
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 1.6e-59 233.0 165 72.7
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 2.2e-56 222.6 162 69.1
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 2.4e-55 219.2 162 72.2
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.4e-55 219.2 162 67.3
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 2.4e-55 219.2 162 66.0
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 9.1e-55 217.2 163 68.7
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 9.1e-55 217.2 160 65.6
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 9.1e-55 217.2 160 66.2
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.5e-54 216.5 159 66.0
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 2.0e-54 216.1 160 67.5
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 2.6e-54 215.7 161 68.9
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 3.5e-54 215.3 162 64.8
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.5e-54 215.3 160 66.2
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 4.5e-54 214.9 160 65.6
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.0e-53 213.8 161 64.6
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.0e-53 213.8 160 65.6
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.0e-53 213.8 162 66.7
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.3e-53 213.4 160 65.6
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.7e-53 213.0 162 67.3
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 2.2e-53 212.6 160 68.1
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 2.9e-53 212.2 160 63.8
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 5.0e-53 211.5 160 66.9
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 8.5e-53 210.7 163 65.6
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 8.5e-53 210.7 160 65.0
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 8.5e-53 210.7 160 65.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.1e-52 210.3 160 69.4
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.5e-52 209.9 146 66.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.5e-52 209.9 146 66.4
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 1.9e-52 209.5 162 64.2
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 1.9e-52 209.5 160 66.9
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 1.9e-52 209.5 162 65.4
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 2.5e-52 209.1 160 67.5
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.5e-52 209.1 166 63.9
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 3.2e-52 208.8 163 63.8
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 3.2e-52 208.8 162 64.8
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 3.2e-52 208.8 163 69.9
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 3.2e-52 208.8 146 65.8
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 3.2e-52 208.8 162 65.4
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 5.5e-52 208.0 161 65.2
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 5.5e-52 208.0 162 64.8
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 7.2e-52 207.6 158 70.9
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.2e-51 206.8 162 64.8
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-51 206.8 166 63.9
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.6e-51 206.5 162 64.2
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 2.1e-51 206.1 162 63.0
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 3.6e-51 205.3 162 63.6
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 4.7e-51 204.9 158 70.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 6.1e-51 204.5 146 65.8
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 6.1e-51 204.5 161 67.1
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 8.0e-51 204.1 156 64.1
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 1.0e-50 203.8 161 65.2
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.8e-50 203.0 160 64.4
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 1.8e-50 203.0 162 64.2
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.3e-50 202.6 162 62.3
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.3e-50 202.6 162 62.3
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 3.0e-50 202.2 156 66.7
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 3.0e-50 202.2 156 66.7
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 3.0e-50 202.2 156 66.7
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 5.2e-50 201.4 164 61.6
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 6.7e-50 201.1 157 65.6
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 8.8e-50 200.7 162 61.1
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 8.8e-50 200.7 160 68.8
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 8.8e-50 200.7 160 68.8
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.5e-49 199.9 155 65.2
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.5e-49 199.9 155 65.2
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.5e-49 199.9 161 60.9
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 2.0e-49 199.5 156 66.0
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 2.0e-49 199.5 160 64.4
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 2.0e-49 199.5 167 60.5
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 2.0e-49 199.5 162 62.3
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.0e-49 199.5 160 68.8
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 2.6e-49 199.1 164 65.2
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 2.6e-49 199.1 160 61.9
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 3.3e-49 198.7 159 62.9
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 3.3e-49 198.7 160 62.5
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.3e-49 198.7 166 62.0
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 4.4e-49 198.4 155 65.8
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 5.7e-49 198.0 160 61.9
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 9.7e-49 197.2 164 59.1
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 1.7e-48 196.4 161 59.6
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 2.8e-48 195.7 156 62.8
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 2.8e-48 195.7 121 69.4
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 4.8e-48 194.9 151 64.2
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 6.3e-48 194.5 153 62.7
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.1e-47 193.7 158 62.7
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.1e-47 193.7 160 61.2
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 1.1e-47 193.7 163 59.5
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 5.3e-47 191.4 163 58.9
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 7.7e-46 187.6 121 71.9
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.7e-45 186.4 163 55.8
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 5.0e-45 184.9 121 71.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 6.5e-45 184.5 147 63.9
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 2.7e-43 179.1 151 60.9
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.8e-42 176.4 168 54.8
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 4.0e-42 175.3 116 69.0
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 5.7e-41 171.4 151 62.9
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 5.3e-39 164.9 148 60.1
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.1e-36 157.1 91 78.0
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 1.4e-34 150.2 163 45.4
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 2.9e-29 132.5 160 42.5
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 7.2e-28 127.9 74 71.6
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 3.0e-26 122.5 122 45.9
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 4.0e-26 122.1 82 70.7
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.7e-24 116.7 107 59.8
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 4.9e-24 115.2 89 62.9
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.4e-23 113.6 92 60.9
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 3.4e-17 92.4 79 62.0
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 3.9e-13 79.0 122 35.2
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 1.1e-12 77.4 51 66.7
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 2.5e-12 76.3 51 68.6
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 2.5e-12 76.3 119 34.5
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 7.3e-12 74.7 164 38.4
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 7.5e-09 64.7 130 33.8


User provided reference genes

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