Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 0.0e+00 1779.2 1205 100.0
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 0.0e+00 1263.4 1097 75.8
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 0.0e+00 1246.9 1101 76.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 0.0e+00 1202.6 1136 69.0
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 0.0e+00 1173.7 1094 72.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 0.0e+00 1172.1 1100 70.3
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 0.0e+00 1139.8 1099 71.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 0.0e+00 1134.8 1096 65.4
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 5.3e-309 1064.7 1125 64.1
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.4e-308 1062.0 1101 67.7
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.4e-298 1030.0 1103 64.0
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 6.9e-293 1011.1 1105 65.0
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 4.8e-278 961.8 1098 63.5
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.2e-273 947.2 1103 58.8
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 3.7e-177 626.7 1222 46.2
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.1e-172 610.9 1150 49.0
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.0e-171 607.1 1151 46.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-168 597.8 1141 47.2
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.3e-168 596.3 1141 47.2
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.5e-167 593.2 1147 49.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.9e-165 587.8 1169 47.6
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 6.1e-164 582.8 1057 50.8
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.3e-162 577.0 1046 48.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 4.1e-160 570.1 1097 41.8
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-155 555.1 1010 47.9
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.3e-155 554.3 1043 49.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.6e-154 550.8 1137 46.4
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.7e-153 548.1 1159 46.7
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 7.0e-152 542.7 1139 46.4
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.0e-150 538.9 1110 46.5
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.5e-149 533.1 1098 47.4
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 5.5e-149 533.1 1124 44.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.4e-149 532.3 1106 44.3
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 3.0e-147 527.3 956 41.9
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.2e-147 526.6 1045 47.8
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.6e-146 524.2 1045 47.8
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 9.8e-146 522.3 1140 45.5
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 8.3e-145 519.2 1096 45.9
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-143 515.4 870 47.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.8e-142 510.4 1096 44.9
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.0e-142 510.0 1040 45.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 3.2e-141 507.3 1170 44.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.2e-141 506.9 1143 44.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 2.1e-140 504.6 883 49.8
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 3.6e-140 503.8 1137 46.0
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.0e-139 502.3 1140 45.1
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.8e-139 499.6 1152 42.0
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-137 494.6 725 44.7
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 2.4e-136 491.1 1157 42.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 9.5e-133 479.2 1028 43.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.1e-132 478.0 1128 43.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.6e-130 471.1 1036 44.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.8e-130 469.2 1037 44.6
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 4.9e-129 466.8 1128 42.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-127 462.2 1135 43.9
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.0e-126 457.6 1134 42.9
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.3e-117 427.2 1090 39.4
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.2e-116 423.3 1012 38.0
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.3e-115 421.4 1096 35.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 9.9e-106 389.4 1041 37.2
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.2e-105 388.3 1049 37.0
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.9e-105 387.9 1062 35.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-104 384.8 1057 37.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.1e-104 384.0 1118 35.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.2e-104 382.9 1047 37.3
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.0e-102 379.4 1124 34.6
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.3e-102 378.3 1061 44.9
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.3e-101 374.4 1016 39.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.4e-99 368.2 1101 38.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.8e-98 363.6 629 39.0
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.7e-97 362.1 491 46.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-96 357.8 1129 37.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.3e-96 356.3 675 37.5
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.5e-95 354.4 727 35.6
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 2.3e-94 351.7 597 39.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.1e-92 345.1 990 36.5
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.8e-92 344.7 1059 34.0
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.1e-88 332.8 601 37.8
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.9e-88 332.0 991 37.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 4.2e-88 330.9 1072 38.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.0e-87 327.0 1036 39.5
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 7.4e-85 320.1 1039 41.7
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 4.8e-84 317.4 750 35.3
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.4e-83 315.8 976 37.9
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.4e-83 315.1 1073 37.4
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.0e-83 314.3 1088 38.1
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.3e-83 313.9 590 38.0
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.6e-82 311.6 623 35.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 7.1e-80 303.5 628 34.6
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.0e-79 300.4 697 34.3
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 4.3e-77 294.3 1081 36.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.4e-77 293.5 614 36.0
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 2.1e-76 292.0 594 37.5
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.8e-76 290.8 1083 36.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.2e-76 290.4 675 35.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 8.2e-76 290.0 1204 35.0
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.0e-74 285.4 1147 36.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 2.0e-74 285.4 681 34.9
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.6e-74 285.0 1039 32.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.6e-74 285.0 754 32.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.4e-74 284.6 602 34.2
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.5e-74 284.3 1023 38.1
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.9e-73 280.8 503 37.8
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 6.0e-71 273.9 1041 31.3
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.0e-70 273.1 1036 32.1
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.8e-70 272.3 1025 36.3
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 5.1e-70 270.8 724 31.4
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.9e-69 268.9 676 33.3
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.3e-69 267.7 758 30.9
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 5.7e-69 267.3 1064 35.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 5.7e-69 267.3 718 31.6
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 5.7e-69 267.3 718 31.6
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.5e-66 259.2 610 33.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 4.5e-66 257.7 1161 31.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.9e-66 257.3 691 31.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.9e-65 255.0 1095 35.2
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 2.9e-65 255.0 1084 37.9
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.8e-65 254.6 1078 38.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 6.5e-65 253.8 450 39.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.2e-64 251.1 583 34.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.2e-64 251.1 634 33.3
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 9.3e-64 250.0 1106 36.3
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.6e-63 249.2 1120 34.4
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.6e-63 249.2 749 30.8
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 4.3e-61 241.1 646 31.0
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.1e-59 235.0 537 32.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.7e-57 229.2 1274 30.3
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 2.2e-57 228.8 606 31.5
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-53 216.5 1195 31.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.3e-53 214.9 519 34.9
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.7e-53 214.2 709 30.5
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.2e-52 212.2 1043 30.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 7.7e-50 203.8 392 37.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-48 199.9 1054 28.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-45 189.9 1237 25.9
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.6e-42 178.7 619 30.7
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.5e-40 172.2 830 29.8
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.6e-39 168.3 647 30.0
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-37 163.3 581 31.3
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.2e-36 157.1 420 31.4
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.4e-35 156.4 654 28.1
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.2e-34 153.3 674 27.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.1e-32 146.7 655 27.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.2e-31 143.3 563 28.4
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.0e-30 138.7 581 29.1
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 8.8e-30 137.1 526 27.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 8.8e-30 137.1 605 28.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 3.4e-29 135.2 1124 28.3
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.2e-23 116.7 408 27.7
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.6e-23 116.3 668 26.6
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 7.0e-19 100.9 1122 29.2
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.7e-17 96.3 541 24.2
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 8.6e-17 94.0 690 24.5
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.1e-15 89.4 643 23.2
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.4e-13 81.6 514 31.3
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 7.0e-11 74.3 556 27.7
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.2e-07 63.5 210 38.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.8e-06 59.7 719 22.4
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-06 59.7 152 32.9
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-06 59.7 152 32.9
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.9e-06 57.4 173 35.8


User provided reference genes

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