Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008463 Lotus japonicus HOM05D003331 ORTHO05D003264 9.3e-87 323.6 169 100.0
Glyma.04G022100 Glycine max HOM05D000531 ORTHO05D003264 1.3e-19 100.5 179 42.5
VMungo1309G1226 Vigna mungo HOM05D003331 ORTHO05D003264 1.1e-18 97.4 151 47.0
Glyma.06G022300 Glycine max HOM05D000531 ORTHO05D003264 1.6e-17 93.6 185 39.5
Phvul.009G018700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.3e-16 90.5 189 39.2
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.4e-10 70.5 111 44.1
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 1.9e-10 70.1 109 46.8
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 6.0e-09 65.1 109 46.8
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 1.0e-08 64.3 110 42.7
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.3e-08 63.9 85 47.1
Thecc.10G131000 Theobroma cacao HOM05D000531 ORTHO05D001630 1.3e-08 63.9 97 46.4
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 1.7e-08 63.5 79 49.4
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.7e-08 63.5 108 42.6
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 1.7e-08 63.5 73 47.9
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 2.3e-08 63.2 168 35.1
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 2.3e-08 63.2 85 45.9
GSVIVG01001940001 Vitis vinifera HOM05D000531 ORTHO05D001630 2.3e-08 63.2 94 44.7
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 3.0e-08 62.8 130 40.0
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.0e-08 62.8 108 41.7
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 3.0e-08 62.8 91 41.8
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 3.0e-08 62.8 76 50.0
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 3.9e-08 62.4 108 41.7
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 5.1e-08 62.0 109 45.9
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 5.1e-08 62.0 92 45.7
Glyma.11G080000 Glycine max HOM05D003331 ORTHO05D003264 6.6e-08 61.6 149 34.9
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 6.6e-08 61.6 76 48.7
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 8.6e-08 61.2 108 40.7
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 8.6e-08 61.2 109 41.3
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 1.1e-07 60.8 126 36.5
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 1.5e-07 60.5 102 42.2
Gohir.A05G285300 Gossypium hirsutum HOM05D000531 ORTHO05D001630 1.5e-07 60.5 97 46.4
Gorai.009G301400 Gossypium raimondii HOM05D000531 ORTHO05D001630 1.5e-07 60.5 97 46.4
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 1.5e-07 60.5 76 52.6
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.9e-07 60.1 123 41.5
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 1.9e-07 60.1 195 30.3
Gohir.A05G285200 Gossypium hirsutum HOM05D000531 ORTHO05D001630 2.5e-07 59.7 105 45.7
Duzib114G0671 Durio zibethinus HOM05D000531 ORTHO05D001630 3.3e-07 59.3 96 41.7
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.3e-07 59.3 73 49.3
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 3.3e-07 59.3 125 39.2
Hund19046 Selenicereus undatus HOM05D000531 ORTHO05D001630 3.3e-07 59.3 94 44.7
Actinidia15450 Actinidia chinensis HOM05D003331 ORTHO05D003264 4.3e-07 58.9 103 38.8
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 4.3e-07 58.9 71 47.9
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.3e-07 58.9 73 49.3
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 4.3e-07 58.9 126 38.1
Zm00001eb331880 Zea mays HOM05D000531 ORTHO05D003264 4.3e-07 58.9 74 48.6
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 5.6e-07 58.5 115 40.9
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 5.6e-07 58.5 106 40.6
Medtr8g075130 Medicago truncatula HOM05D003331 ORTHO05D003264 5.6e-07 58.5 168 35.7
CANSAT21G2102 Cannabis sativa HOM05D000531 ORTHO05D001630 7.3e-07 58.2 93 39.8
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 7.3e-07 58.2 218 29.8
ClCG08G008570 Citrullus lanatus HOM05D000531 ORTHO05D001630 7.3e-07 58.2 94 44.7
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 7.3e-07 58.2 73 47.9
CsaV3_6G004560 Cucumis sativus L. HOM05D000531 ORTHO05D001630 7.3e-07 58.2 94 44.7
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 7.3e-07 58.2 73 50.7
Nitab4.5_0000123g0060 Nicotiana tabacum HOM05D000531 ORTHO05D001630 7.3e-07 58.2 96 41.7
Nitab4.5_0002131g0060 Nicotiana tabacum HOM05D000531 ORTHO05D001630 7.3e-07 58.2 96 41.7
Peaxi162Scf00003g05367 Petunia axillaris HOM05D000531 ORTHO05D001630 7.3e-07 58.2 96 41.7
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 7.3e-07 58.2 108 41.7
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 7.3e-07 58.2 185 33.5
MSTRG.26201 Avicennia marina HOM05D000531 ORTHO05D001630 9.5e-07 57.8 96 44.8
CARHR167000 Cardamine hirsuta HOM05D000531 ORTHO05D001630 9.5e-07 57.8 93 40.9
Thhalv10006121m.g Eutrema salsugineum HOM05D000531 ORTHO05D001630 9.5e-07 57.8 93 40.9
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 9.5e-07 57.8 138 36.2
Glyma.08G227000 Glycine max HOM05D000531 ORTHO05D001630 9.5e-07 57.8 101 42.6
HPP92_012946 Vanilla planifolia HOM05D003331 ORTHO05D003264 9.5e-07 57.8 70 51.4
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-06 57.4 116 37.9
Eucgr.K01706 Eucalyptus grandis HOM05D000531 ORTHO05D001630 1.2e-06 57.4 126 39.7
HanXRQChr04g0125451 Helianthus annuus HOM05D000531 ORTHO05D001630 1.2e-06 57.4 91 41.8
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 1.2e-06 57.4 73 49.3
RcHm_v2.0_Chr1g0330441 Rosa chinensis HOM05D000531 ORTHO05D001630 1.2e-06 57.4 82 50.0
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 1.2e-06 57.4 85 50.6
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 1.2e-06 57.4 122 41.8
ATR0180G005 Amborella trichopoda HOM05D000531 ORTHO05D003264 1.6e-06 57.0 134 37.3
AL5G38230 Arabidopsis lyrata HOM05D000531 ORTHO05D001630 1.6e-06 57.0 132 34.8
MSTRG.24234 Avicennia marina HOM05D003331 ORTHO05D003264 1.6e-06 57.0 74 44.6
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 1.6e-06 57.0 116 37.9
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 1.6e-06 57.0 124 34.7
Eucgr.J00320 Eucalyptus grandis HOM05D000531 ORTHO05D001630 1.6e-06 57.0 97 43.3
Nitab4.5_0000811g0030 Nicotiana tabacum HOM05D000531 ORTHO05D001630 1.6e-06 57.0 118 39.0
PGR142G1180 Punica granatum HOM05D000531 ORTHO05D001630 1.6e-06 57.0 100 41.0
Solyc10g081350.2 Solanum lycopersicum HOM05D000531 ORTHO05D001630 1.6e-06 57.0 117 38.5
Sopen10g031850 Solanum pennellii HOM05D000531 ORTHO05D001630 1.6e-06 57.0 117 38.5
TWI15G1242 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 1.6e-06 57.0 99 41.4
TAR633G1290 Trochodendron aralioides HOM05D000531 ORTHO05D001630 1.6e-06 57.0 119 40.3
BcaC07g40114 Brassica carinata HOM05D000531 ORTHO05D001630 2.1e-06 56.6 134 34.3
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-06 56.6 182 34.6
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-06 56.6 184 33.2
CAN.G128.130 Capsicum annuum HOM05D000531 ORTHO05D001630 2.1e-06 56.6 118 39.0
CDE02G3807 Ceratophyllum demersum HOM05D000531 ORTHO05D003264 2.1e-06 56.6 96 40.6
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.1e-06 56.6 75 49.3
FvH4_7g04850 Fragaria vesca HOM05D000531 ORTHO05D001630 2.1e-06 56.6 97 44.3
Glyma.03G003400 Glycine max HOM05D000531 ORTHO05D001630 2.1e-06 56.6 94 42.6
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.1e-06 56.6 119 40.3
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 2.1e-06 56.6 137 36.5
Nn2g14613 Nelumbo nucifera HOM05D000531 ORTHO05D001630 2.1e-06 56.6 97 43.3
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 2.1e-06 56.6 124 35.5
Sc13g0000680 Simmondsia chinensis HOM05D000531 ORTHO05D001630 2.1e-06 56.6 97 42.3
TWI38G1329 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 2.1e-06 56.6 96 41.7
TWI63G0520 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 2.1e-06 56.6 96 41.7
VMungo1383G2950 Vigna mungo HOM05D000531 ORTHO05D001630 2.1e-06 56.6 104 42.3
CDE08G1274 Ceratophyllum demersum HOM05D000531 ORTHO05D001630 2.8e-06 56.2 97 41.2
Glyma.04G124200 Glycine max HOM05D000531 ORTHO05D001630 2.8e-06 56.2 82 47.6
Lalb_Chr19g0132611 Lupinus albus HOM05D000531 ORTHO05D001630 2.8e-06 56.2 97 43.3
MD02G1266800 Malus domestica HOM05D000531 ORTHO05D001630 2.8e-06 56.2 96 40.6
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 2.8e-06 56.2 114 35.1
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 2.8e-06 56.2 114 35.1
PGR044G2422 Punica granatum HOM05D000531 ORTHO05D001630 2.8e-06 56.2 96 39.6
BcaC08g44808 Brassica carinata HOM05D000531 ORTHO05D001630 3.6e-06 55.8 132 34.1
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 3.6e-06 55.8 115 40.0
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.6e-06 55.8 76 47.4
Lsat_1_v5_gn_8_85300 Lactuca sativa HOM05D000531 ORTHO05D001630 3.6e-06 55.8 117 36.8
Prupe.2G056800 Prunus persica HOM05D000531 ORTHO05D001630 3.6e-06 55.8 97 44.3
Sp5g05740 Schrenkiella parvula HOM05D000531 ORTHO05D001630 3.6e-06 55.8 132 34.8
Aa31LG3G980 Aethionema arabicum HOM05D000531 ORTHO05D001630 4.7e-06 55.5 132 34.8
BcaC02g09874 Brassica carinata HOM05D000531 ORTHO05D001630 4.7e-06 55.5 134 33.6
Carub.0005s2358 Capsella rubella HOM05D000531 ORTHO05D001630 4.7e-06 55.5 133 35.3
Cpa.g.sc33.182 Carica papaya HOM05D000531 ORTHO05D001630 4.7e-06 55.5 93 43.0
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.7e-06 55.5 60 53.3
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.7e-06 55.5 76 47.4
Medtr7g088090 Medicago truncatula HOM05D000531 ORTHO05D001630 4.7e-06 55.5 97 43.3
Sopen10g028610 Solanum pennellii HOM05D000531 ORTHO05D001630 4.7e-06 55.5 97 42.3
Aa31LG10G11700 Aethionema arabicum HOM05D000531 ORTHO05D001630 6.2e-06 55.1 134 33.6
EL10Ac3g07386 Beta vulgaris HOM05D000531 ORTHO05D001630 6.2e-06 55.1 97 42.3
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 6.2e-06 55.1 124 37.9
Dinv14548 Davidia involucrata HOM05D000531 ORTHO05D001630 6.2e-06 55.1 96 40.6
Migut.K00199 Erythranthe guttata HOM05D000531 ORTHO05D001630 6.2e-06 55.1 109 42.2
Glyma.19G122800 Glycine max HOM05D000531 ORTHO05D001630 6.2e-06 55.1 94 42.6
Lj1g0026220 Lotus japonicus HOM05D000531 ORTHO05D001630 6.2e-06 55.1 100 41.0
MD07G1052500 Malus domestica HOM05D000531 ORTHO05D001630 6.2e-06 55.1 82 48.8
PGSC0003DMG400007208 Solanum tuberosum HOM05D000531 ORTHO05D001630 6.2e-06 55.1 96 40.6
SGA_v2.0_scaffold17G08000 Striga asiatica HOM05D000531 ORTHO05D001630 6.2e-06 55.1 91 44.0
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 8.1e-06 54.7 124 37.9
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 8.1e-06 54.7 83 43.4
Ca_08335_v3 Cicer arietinum L. HOM05D000531 ORTHO05D001630 8.1e-06 54.7 97 43.3
Dinv37063 Davidia involucrata HOM05D000531 ORTHO05D001630 8.1e-06 54.7 96 40.6
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 8.1e-06 54.7 76 47.4
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 8.1e-06 54.7 95 44.2
Os07g0686100 Oryza sativa ssp. japonica HOM05D000531 ORTHO05D001630 8.1e-06 54.7 51 58.8


User provided reference genes

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