Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 8.0e-31 137.1 109 100.0
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 9.8e-13 77.0 86 64.0
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 3.7e-12 75.1 62 69.4
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 6.4e-12 74.3 61 62.3
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 3.2e-11 72.0 61 62.3
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 5.4e-11 71.2 62 61.3
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 9.2e-11 70.5 41 80.5
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.2e-10 70.1 57 63.2
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 2.7e-10 68.9 61 57.4
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 4.6e-10 68.2 118 62.7
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 7.8e-10 67.4 61 59.0
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 1.3e-09 66.6 61 59.0
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.7e-09 66.2 52 61.5
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 2.3e-09 65.9 59 57.6
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 3.9e-09 65.1 75 46.7
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 3.9e-09 65.1 59 61.0
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 8.6e-09 63.9 54 59.3
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 8.6e-09 63.9 56 58.9
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 8.6e-09 63.9 45 71.1
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 1.1e-08 63.5 61 57.4
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.9e-08 62.8 41 73.2
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 1.9e-08 62.8 57 57.9
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 1.9e-08 62.8 61 59.0
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.9e-08 62.8 57 57.9
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 4.3e-08 61.6 56 58.9
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 5.6e-08 61.2 61 59.0
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 5.6e-08 61.2 41 70.7
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 5.6e-08 61.2 50 64.0
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 9.5e-08 60.5 41 70.7
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.6e-07 59.7 66 51.5
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.6e-07 59.7 73 43.8
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 1.6e-07 59.7 39 71.8
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 2.1e-07 59.3 37 75.7
SGA_v2.0_scaffold8G04664 Striga asiatica HOM05D007427 ORTHO05D006413 2.1e-07 59.3 43 62.8
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 2.8e-07 58.9 60 53.3
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 2.8e-07 58.9 41 68.3
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.8e-07 58.9 55 52.7
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.8e-07 58.9 59 54.2
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 2.8e-07 58.9 63 50.8
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 3.6e-07 58.5 56 57.1
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 3.6e-07 58.5 60 50.0
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 3.6e-07 58.5 52 57.7
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 4.7e-07 58.2 40 70.0
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 6.2e-07 57.8 41 68.3
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 6.2e-07 57.8 62 50.0
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 6.2e-07 57.8 74 47.3
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 1.1e-06 57.0 54 50.0
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 1.4e-06 56.6 60 48.3
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.4e-06 56.6 106 50.9
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 1.4e-06 56.6 63 50.8
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 1.8e-06 56.2 39 66.7
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.8e-06 56.2 54 53.7
PSO063G2436 Papaver somniferum HOM05D007427 ORTHO05D006413 1.8e-06 56.2 46 65.2
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.8e-06 56.2 61 54.1
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.3e-06 55.8 91 51.6
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 3.1e-06 55.5 64 50.0
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.1e-06 55.5 76 44.7
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.1e-06 55.5 76 44.7
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 3.1e-06 55.5 123 48.0
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 4.0e-06 55.1 50 58.0
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 4.0e-06 55.1 66 77.3
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 4.0e-06 55.1 64 48.4
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 4.0e-06 55.1 64 48.4
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.0e-06 55.1 76 44.7
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 6.8e-06 54.3 61 49.2
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 8.9e-06 53.9 57 49.1


User provided reference genes

Program Settings