Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.4e-175 620.5 822 100.0
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 9.8e-108 396.0 825 84.4
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.7e-107 394.0 829 85.5
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.2e-100 372.5 826 81.7
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 7.5e-100 369.8 802 83.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.0e-97 361.7 822 82.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.0e-96 357.8 803 84.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 7.3e-95 353.2 802 83.5
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.8e-92 343.6 803 83.8
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.1e-90 337.4 828 82.4
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-85 322.8 803 82.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.4e-82 312.4 803 82.3
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 3.4e-68 264.6 774 79.1
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.3e-67 262.7 248 66.1
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 8.4e-67 260.0 820 77.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.3e-66 256.5 763 79.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.0e-64 251.5 824 76.9
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 5.1e-64 250.8 257 54.1
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 5.1e-64 250.8 763 79.7
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 1.3e-62 246.1 151 76.2
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.1e-61 243.0 252 56.0
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.4e-61 241.9 151 74.2
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.1e-61 241.5 763 67.2
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 6.9e-61 240.4 821 74.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.2e-60 239.6 261 50.6
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.5e-60 239.2 263 52.5
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 7.6e-60 236.9 259 52.5
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 9.9e-60 236.5 230 57.0
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-59 235.7 258 52.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.7e-59 235.7 234 55.1
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.7e-59 235.7 749 80.4
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.2e-59 235.3 237 54.4
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.9e-59 235.0 224 54.5
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.1e-58 233.0 263 51.3
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.2e-57 229.6 264 50.8
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.6e-57 229.2 261 49.8
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 3.5e-57 228.0 244 52.0
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 6.0e-57 227.3 222 54.1
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.3e-56 226.1 765 78.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.3e-56 226.1 195 57.9
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.8e-56 225.7 255 51.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.9e-56 224.6 255 51.0
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 6.7e-56 223.8 763 78.2
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.5e-55 222.6 255 47.8
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 5.6e-55 220.7 242 52.1
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 5.6e-55 220.7 172 67.4
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-54 219.5 259 48.3
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 6.2e-54 217.2 196 58.7
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 6.2e-54 217.2 763 78.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.1e-53 216.5 821 74.4
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.1e-53 216.5 823 74.4
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.4e-53 216.1 253 49.4
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.1e-53 214.9 188 59.6
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.1e-53 214.9 205 58.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.5e-52 211.1 189 61.4
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.0e-51 209.9 219 52.5
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.3e-51 209.5 274 46.4
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-51 208.8 238 50.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 8.4e-51 206.8 260 49.6
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.9e-50 205.7 167 63.5
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.2e-50 204.9 179 61.5
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 3.2e-50 204.9 179 61.5
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-50 204.5 152 68.4
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-50 204.5 152 68.4
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 4.2e-50 204.5 198 54.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 7.1e-50 203.8 180 60.6
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 9.3e-50 203.4 221 50.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-48 198.7 206 55.3
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 8.7e-48 196.8 226 47.8
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.1e-47 196.4 822 72.0
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.5e-47 195.3 228 49.6
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 4.3e-47 194.5 234 48.3
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 5.7e-47 194.1 168 59.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-46 192.6 209 55.0
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.8e-46 191.8 212 50.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 8.2e-46 190.3 222 50.0
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.3e-45 187.6 151 57.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-44 186.4 234 45.7
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-44 185.7 195 54.9
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 3.4e-44 184.9 215 50.2
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.4e-44 184.9 206 53.4
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 5.8e-44 184.1 259 43.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 7.6e-44 183.7 230 47.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.1e-42 179.9 196 49.0
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 4.2e-42 177.9 191 49.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.2e-41 176.4 205 50.2
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.6e-41 176.0 150 53.3
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 4.3e-39 167.9 129 65.9
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 5.7e-39 167.5 148 52.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 5.7e-39 167.5 151 55.0
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.8e-38 165.2 129 64.3
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 6.9e-37 160.6 166 54.2
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 6.9e-37 160.6 194 46.9
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 2.0e-36 159.1 120 66.7
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.9e-36 157.5 189 51.3
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.7e-36 157.1 139 62.6
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.0e-35 156.8 149 55.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-35 156.4 191 48.2
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.1e-34 153.3 116 67.2
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.5e-34 152.1 145 53.8
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.5e-34 152.1 145 53.8
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.5e-34 152.1 150 56.0
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.2e-34 151.4 171 52.0
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 6.1e-33 147.5 149 47.0
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 7.9e-33 147.1 149 47.0
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.0e-32 146.7 137 56.2
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.0e-32 146.7 148 48.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-32 146.0 188 45.2
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 6.7e-32 144.1 151 47.0
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 6.7e-32 144.1 149 47.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.5e-31 142.9 163 47.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.0e-31 142.5 202 42.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 7.4e-31 140.6 174 46.6
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.1e-29 136.7 201 44.3
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 6.9e-29 134.0 145 49.7
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.0e-28 132.5 129 54.3
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.9e-27 128.6 157 46.5
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.4e-26 126.3 157 42.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-25 122.9 109 52.3
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.3e-24 119.0 165 43.0
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 3.3e-23 115.2 172 42.4
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.4e-23 114.8 212 36.8
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.4e-23 114.0 141 39.7
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 7.4e-23 114.0 140 40.7
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 9.7e-23 113.6 126 46.0
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.2e-22 112.5 150 39.3
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-20 106.7 168 42.3
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.2e-12 80.1 140 35.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.7e-09 68.9 118 38.1
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.0e-08 67.0 46 69.6
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 2.2e-06 59.3 170 24.7
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 3.7e-06 58.5 150 25.3
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.7e-06 58.5 173 23.1
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 6.3e-06 57.8 169 25.4
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 8.3e-06 57.4 168 28.6
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 8.3e-06 57.4 166 25.9


User provided reference genes

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