Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008049 Lotus japonicus HOM05D004090 ORTHO05D002871 0.0e+00 1099.0 559 100.0
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 4.4e-250 867.8 559 82.3
Lj6g0006059 Lotus japonicus HOM05D005861 ORTHO05D002871 4.3e-88 329.7 262 71.0
Medtr6g090350 Medicago truncatula HOM05D009048 ORTHO05D002871 1.2e-50 205.3 564 29.6
Medtr8g038700 Medicago truncatula HOM05D004090 ORTHO05D002871 2.7e-50 204.1 467 31.5
Medtr6g464440 Medicago truncatula HOM05D009048 ORTHO05D002871 1.7e-47 194.9 535 31.6
Medtr3g048220 Medicago truncatula HOM05D009048 ORTHO05D002871 1.4e-41 175.3 559 27.7
Medtr3g045050 Medicago truncatula HOM05D009048 ORTHO05D002871 1.1e-40 172.2 239 40.6
Medtr0202s0040 Medicago truncatula HOM05D009048 ORTHO05D002871 1.5e-40 171.8 540 28.3
Medtr0909s0020 Medicago truncatula HOM05D009048 ORTHO05D002871 1.5e-40 171.8 427 31.9
Medtr6g034305 Medicago truncatula HOM05D009048 ORTHO05D002871 8.2e-39 166.0 285 36.5
Psat1g162280 Pisum sativum HOM05D004090 ORTHO05D002871 7.0e-38 162.9 550 28.9
Medtr6g053030 Medicago truncatula HOM05D009048 ORTHO05D002871 1.2e-37 162.2 425 30.4
Medtr6g053040 Medicago truncatula HOM05D009048 ORTHO05D002871 1.6e-37 161.8 325 33.5
VMungo0331G1942 Vigna mungo HOM05D004090 ORTHO05D002871 4.2e-35 153.7 560 28.0
Medtr7g034050 Medicago truncatula HOM05D004090 ORTHO05D002871 2.3e-33 147.9 479 26.1
Medtr8g060470 Medicago truncatula HOM05D009048 ORTHO05D002871 1.5e-32 145.2 313 31.9
VMungo0331G0842 Vigna mungo HOM05D004090 ORTHO05D002871 4.4e-32 143.7 519 26.6
VMungo0251G1799 Vigna mungo HOM05D004090 ORTHO05D002871 1.3e-31 142.1 311 30.9
VMungo1012G0002 Vigna mungo HOM05D004090 ORTHO05D002871 1.7e-31 141.7 310 30.3
VMungo1012G0001 Vigna mungo HOM05D004090 ORTHO05D002871 3.7e-31 140.6 324 29.9
Phvul.004G085482 Phaseolus vulgaris HOM05D004090 ORTHO05D002871 1.4e-30 138.7 490 24.9
Medtr3g450650 Medicago truncatula HOM05D004090 ORTHO05D002871 1.8e-30 138.3 264 32.6
VMungo0540G0212 Vigna mungo HOM05D008534 ORTHO05D002871 1.8e-30 138.3 517 26.1
VMungo0464G0545 Vigna mungo HOM05D004090 ORTHO05D002871 5.4e-30 136.7 323 30.3
VMungo1309G2246 Vigna mungo HOM05D004090 ORTHO05D002871 9.1e-30 136.0 255 34.1
VMungo1309G1548 Vigna mungo HOM05D004090 ORTHO05D002871 2.7e-29 134.4 504 27.8
VMungo0647G1815 Vigna mungo HOM05D004090 ORTHO05D002871 7.7e-29 132.9 321 29.3
VMungo1127G0904 Vigna mungo HOM05D004090 ORTHO05D002871 3.8e-28 130.6 519 26.0
VMungo0464G0936 Vigna mungo HOM05D004090 ORTHO05D002871 6.5e-28 129.8 562 27.2
VMungo1309G2480 Vigna mungo HOM05D004090 ORTHO05D002871 6.5e-28 129.8 184 35.9
VMungo0464G2021 Vigna mungo HOM05D004090 ORTHO05D002871 1.1e-27 129.0 225 35.6
VMungo0647G2408 Vigna mungo HOM05D004090 ORTHO05D002871 1.1e-27 129.0 229 35.4
VMungo0251G2593 Vigna mungo HOM05D004090 ORTHO05D002871 1.5e-27 128.6 266 32.0
VMungo1383G0926 Vigna mungo HOM05D004090 ORTHO05D002871 1.5e-27 128.6 514 24.1
VMungo0251G0079 Vigna mungo HOM05D008534 ORTHO05D002871 2.5e-27 127.9 249 29.3
VMungo0647G0392 Vigna mungo HOM05D008534 ORTHO05D002871 3.2e-27 127.5 235 32.8
VMungo1127G0516 Vigna mungo HOM05D004090 ORTHO05D002871 7.2e-27 126.3 439 24.4
Phvul.008G104250 Phaseolus vulgaris HOM05D004090 ORTHO05D002871 9.4e-27 125.9 532 26.5
VMungo0720G0692 Vigna mungo HOM05D004090 ORTHO05D002871 9.4e-27 125.9 448 26.6
VMungo1215G0179 Vigna mungo HOM05D004090 ORTHO05D002871 1.2e-26 125.6 290 31.4
VMungo1368G0001 Vigna mungo HOM05D004090 ORTHO05D002871 2.1e-26 124.8 239 32.6
VMungo0720G1201 Vigna mungo HOM05D004090 ORTHO05D002871 2.7e-26 124.4 555 25.6
VMungo1127G0314 Vigna mungo HOM05D008534 ORTHO05D002871 2.3e-25 121.3 192 36.5
Medtr0009s0150 Medicago truncatula HOM05D009048 ORTHO05D002871 4.0e-25 120.6 195 35.9
VMungo0647G1226 Vigna mungo HOM05D008534 ORTHO05D002871 8.8e-25 119.4 241 30.7
arahy.Tifrunner.gnm1.ann1.KCFV9M Arachis hypogaea HOM05D004090 ORTHO05D002871 1.5e-24 118.6 188 34.6
VMungo0540G0106 Vigna mungo HOM05D004090 ORTHO05D002871 1.5e-24 118.6 198 32.3
VMungo0251G0871 Vigna mungo HOM05D004090 ORTHO05D002871 4.4e-24 117.1 140 43.6
VMungo0720G0226 Vigna mungo HOM05D008534 ORTHO05D002871 5.7e-24 116.7 277 30.0
VMungo1215G3414 Vigna mungo HOM05D008534 ORTHO05D002871 5.7e-24 116.7 177 34.5
VMungo1383G2973 Vigna mungo HOM05D004090 ORTHO05D002871 2.8e-23 114.4 170 37.1
arahy.Tifrunner.gnm1.ann1.7N2XUP Arachis hypogaea HOM05D004090 ORTHO05D002871 3.7e-23 114.0 187 33.7
VMungo0720G0263 Vigna mungo HOM05D008534 ORTHO05D002871 3.7e-23 114.0 180 34.4
arahy.Tifrunner.gnm1.ann1.85NR4N Arachis hypogaea HOM05D004090 ORTHO05D002871 1.1e-22 112.5 229 28.4
arahy.Tifrunner.gnm1.ann1.7278N0 Arachis hypogaea HOM05D004090 ORTHO05D002871 9.1e-22 109.4 199 33.2
Lj2g0008490 Lotus japonicus HOM05D004090 ORTHO05D002871 1.6e-21 108.6 239 30.1
Medtr6g055980 Medicago truncatula HOM05D009048 ORTHO05D002871 5.9e-21 106.7 157 38.2
Medtr1g040490 Medicago truncatula HOM05D009048 ORTHO05D002871 3.8e-20 104.0 136 39.7
arahy.Tifrunner.gnm1.ann1.RV32KW Arachis hypogaea HOM05D004090 ORTHO05D002871 5.0e-20 103.6 538 21.9
Medtr7g032790 Medicago truncatula HOM05D009048 ORTHO05D002871 6.6e-20 103.2 129 41.9
VMungo0540G1598 Vigna mungo HOM05D004090 ORTHO05D002871 1.1e-19 102.4 554 24.2
Medtr1g051540 Medicago truncatula HOM05D009048 ORTHO05D002871 9.5e-19 99.4 146 38.4
VMungo0540G0038 Vigna mungo HOM05D004090 ORTHO05D002871 1.6e-18 98.6 133 34.6
VMungo1383G3110 Vigna mungo HOM05D008534 ORTHO05D002871 2.1e-18 98.2 112 42.0
VMungo0647G1512 Vigna mungo HOM05D008534 ORTHO05D002871 2.8e-18 97.8 131 36.6
VMungo0331G1889 Vigna mungo HOM05D004090 ORTHO05D002871 4.7e-18 97.1 229 31.0
Psat3g188240 Pisum sativum HOM05D009048 ORTHO05D002871 6.1e-18 96.7 149 38.3
Psat2g008760 Pisum sativum HOM05D009048 ORTHO05D002871 8.0e-18 96.3 182 29.1
VMungo0331G0934 Vigna mungo HOM05D004090 ORTHO05D002871 8.0e-18 96.3 130 37.7
VMungo0647G2244 Vigna mungo HOM05D004090 ORTHO05D002871 1.4e-17 95.5 101 44.6
VMungo0464G1201 Vigna mungo HOM05D004090 ORTHO05D002871 1.8e-17 95.1 161 36.0
VMungo0647G0178 Vigna mungo HOM05D004090 ORTHO05D002871 2.3e-17 94.7 122 41.0
arahy.Tifrunner.gnm1.ann1.4EK815 Arachis hypogaea HOM05D004090 ORTHO05D002871 3.0e-17 94.4 537 23.5
VMungo0647G2204 Vigna mungo HOM05D004090 ORTHO05D002871 5.2e-17 93.6 82 53.7
VMungo1383G2750 Vigna mungo HOM05D004090 ORTHO05D002871 8.9e-17 92.8 213 30.5
VMungo0251G3211 Vigna mungo HOM05D004090 ORTHO05D002871 2.0e-16 91.7 281 25.3
VMungo0540G1798 Vigna mungo HOM05D004090 ORTHO05D002871 2.0e-16 91.7 133 35.3
Medtr3g050960 Medicago truncatula HOM05D009048 ORTHO05D002871 3.4e-16 90.9 204 32.4
TPR.G21984 Trifolium pratense HOM05D025246 ORTHO05D002871 3.4e-16 90.9 192 34.4
VMungo1215G2993 Vigna mungo HOM05D004090 ORTHO05D002871 5.7e-16 90.1 151 35.8
Phvul.005G110250 Phaseolus vulgaris HOM05D004090 ORTHO05D002871 9.8e-16 89.4 480 22.7
VMungo0540G1865 Vigna mungo HOM05D004090 ORTHO05D002871 1.7e-15 88.6 85 47.1
Medtr0034s0130 Medicago truncatula HOM05D020442 ORTHO05D002871 2.2e-15 88.2 137 36.5
TPR.G15018 Trifolium pratense HOM05D004090 ORTHO05D002871 2.2e-15 88.2 117 39.3
VMungo0464G1097 Vigna mungo HOM05D004090 ORTHO05D002871 2.9e-15 87.8 136 34.6
VMungo1383G2195 Vigna mungo HOM05D008534 ORTHO05D002871 6.3e-15 86.7 556 22.5
Psat0s302g0080 Pisum sativum HOM05D009048 ORTHO05D002871 8.3e-15 86.3 205 28.8
VMungo0251G2275 Vigna mungo HOM05D004090 ORTHO05D002871 1.1e-14 85.9 131 35.9
Medtr3g047670 Medicago truncatula HOM05D009048 ORTHO05D002871 2.4e-14 84.7 152 31.6
VMungo1383G1095 Vigna mungo HOM05D004090 ORTHO05D002871 3.2e-14 84.3 112 36.6
VMungo0251G2188 Vigna mungo HOM05D008534 ORTHO05D002871 5.4e-14 83.6 159 34.6
VMungo0251G3795 Vigna mungo HOM05D004090 ORTHO05D002871 1.6e-13 82.0 101 44.6
Medtr8g075655 Medicago truncatula HOM05D020442 ORTHO05D002871 2.7e-13 81.3 135 34.8
arahy.Tifrunner.gnm1.ann1.PA39DN Arachis hypogaea HOM05D004090 ORTHO05D002871 1.7e-12 78.6 82 37.8
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 2.3e-12 78.2 82 42.7
Medtr3g449650 Medicago truncatula HOM05D020442 ORTHO05D002871 5.0e-12 77.0 177 31.1
VMungo1215G1008 Vigna mungo HOM05D004090 ORTHO05D002871 5.0e-12 77.0 139 31.7
VMungo1383G0119 Vigna mungo HOM05D004090 ORTHO05D002871 5.0e-12 77.0 138 32.6
VMungo0647G0810 Vigna mungo HOM05D004090 ORTHO05D002871 8.6e-12 76.3 107 42.1
Psat4g031320 Pisum sativum HOM05D009679 ORTHO05D012251 1.9e-11 75.1 179 27.9
Medtr2g054440 Medicago truncatula HOM05D009048 ORTHO05D002871 2.5e-11 74.7 133 32.3
VMungo1383G0517 Vigna mungo HOM05D004090 ORTHO05D002871 2.5e-11 74.7 93 38.7
Medtr1g054370 Medicago truncatula HOM05D010796 ORTHO05D013575 5.6e-11 73.6 255 27.8
Psat5g063080 Pisum sativum HOM05D009048 ORTHO05D002871 1.2e-10 72.4 128 29.7
Medtr1g054385 Medicago truncatula HOM05D010796 ORTHO05D013575 1.6e-10 72.0 166 28.9
Medtr5g058300 Medicago truncatula HOM05D020442 ORTHO05D002871 2.8e-10 71.2 170 29.4
Psat4g149320 Pisum sativum HOM05D004090 ORTHO05D002871 8.0e-10 69.7 81 34.6
Psat5g265640 Pisum sativum HOM05D009048 ORTHO05D002871 8.0e-10 69.7 103 30.1
Psat2g175840 Pisum sativum HOM05D009048 ORTHO05D012251 4.0e-09 67.4 126 26.2
Psat0s2694g0080 Pisum sativum HOM05D007871 ORTHO05D010918 5.2e-09 67.0 66 47.0
VMungo1127G1639 Vigna mungo HOM05D008534 ORTHO05D002871 5.2e-09 67.0 130 34.6
VMungo0464G0275 Vigna mungo HOM05D004090 ORTHO05D002871 6.8e-09 66.6 103 36.9
VMungo0540G0125 Vigna mungo HOM05D004090 ORTHO05D002871 8.9e-09 66.2 127 33.1
Psat4g147040 Pisum sativum HOM05D007871 ORTHO05D010918 1.5e-08 65.5 64 48.4
Psat2g047720 Pisum sativum HOM05D007871 ORTHO05D010918 2.0e-08 65.1 63 47.6
TPR.G3313 Trifolium pratense HOM05D010796 ORTHO05D013575 2.6e-08 64.7 285 26.3
Psat1g197720 Pisum sativum HOM05D004320 ORTHO05D010918 3.4e-08 64.3 42 61.9
Psat5g082480 Pisum sativum HOM05D009048 ORTHO05D002871 3.4e-08 64.3 122 28.7
TPR.G30311 Trifolium pratense HOM05D010796 ORTHO05D013575 3.4e-08 64.3 262 26.0
Psat2g171240 Pisum sativum HOM05D007871 ORTHO05D010918 4.4e-08 63.9 64 48.4
VMungo1383G3307 Vigna mungo HOM05D008534 ORTHO05D002871 4.4e-08 63.9 76 35.5
Glyma.03G027100 Glycine max HOM05D004090 ORTHO05D002871 9.8e-08 62.8 106 39.6
Os06g0165300 Oryza sativa ssp. japonica HOM05D004287 ORTHO05D000116 1.7e-07 62.0 169 27.8
VMungo1309G2125 Vigna mungo HOM05D004090 ORTHO05D002871 1.7e-07 62.0 211 24.6
Ca_12032_v3 Cicer arietinum L. HOM05D010796 ORTHO05D013575 2.2e-07 61.6 182 29.7
Ca_12035_v3 Cicer arietinum L. HOM05D010796 ORTHO05D013575 2.2e-07 61.6 182 29.7
Psat4g038200 Pisum sativum HOM05D009679 ORTHO05D012251 2.2e-07 61.6 110 29.1
arahy.Tifrunner.gnm1.ann1.V2CT09 Arachis hypogaea HOM05D004090 ORTHO05D002871 2.9e-07 61.2 134 29.9
ECA246G1436 Erigeron canadensis HOM05D008083 ORTHO05D003839 2.9e-07 61.2 127 34.6
Psat7g075880 Pisum sativum HOM05D007871 ORTHO05D010918 2.9e-07 61.2 66 43.9
Os06g0174800 Oryza sativa ssp. japonica HOM05D004287 ORTHO05D000116 3.7e-07 60.8 153 29.4
Medtr1g054360 Medicago truncatula HOM05D010796 ORTHO05D013575 4.9e-07 60.5 235 26.4
Medtr5g048290 Medicago truncatula HOM05D010796 ORTHO05D013575 4.9e-07 60.5 273 25.3
Medtr5g085150 Medicago truncatula HOM05D010796 ORTHO05D013575 4.9e-07 60.5 168 33.9
Psat4g043200 Pisum sativum HOM05D001053 ORTHO05D007087 8.3e-07 59.7 198 26.8
Psat1g184360 Pisum sativum HOM05D007871 ORTHO05D010918 1.1e-06 59.3 58 50.0
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.4e-06 58.9 112 31.2
Medtr8g079320 Medicago truncatula HOM05D009048 ORTHO05D002871 1.4e-06 58.9 52 46.2
VMungo0720G2425 Vigna mungo HOM05D004090 ORTHO05D002871 1.4e-06 58.9 209 26.3
ECA247G0856 Erigeron canadensis HOM05D008498 ORTHO05D002071 1.9e-06 58.5 109 30.3
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.9e-06 58.5 112 30.4
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 1.9e-06 58.5 112 30.4
VMungo1080G0207 Vigna mungo HOM05D004090 ORTHO05D002871 3.2e-06 57.8 95 34.7
VMungo1127G0450 Vigna mungo HOM05D004090 ORTHO05D002871 3.2e-06 57.8 136 25.7
ECA247G0609 Erigeron canadensis HOM05D000014 ORTHO05D000093 4.1e-06 57.4 103 30.1
Medtr1g054365 Medicago truncatula HOM05D010796 ORTHO05D013575 4.1e-06 57.4 181 27.1
Ca_27457_v3 Cicer arietinum L. HOM05D004090 ORTHO05D149283 7.0e-06 56.6 99 30.3
Medtr0139s0020 Medicago truncatula HOM05D009048 ORTHO05D002871 7.0e-06 56.6 567 20.5


User provided reference genes

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