Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 7.1e-240 833.6 432 100.0
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 1.0e-182 643.7 429 78.3
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.4e-179 633.3 431 75.6
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 3.1e-179 632.1 427 76.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 3.1e-179 632.1 431 75.2
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 3.7e-172 608.6 428 74.5
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 3.7e-172 608.6 433 73.4
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 1.1e-171 607.1 432 73.8
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.8e-151 539.3 436 64.9
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 1.5e-149 533.5 421 65.8
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 3.7e-148 528.9 462 61.5
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.1e-144 517.3 412 64.3
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 2.0e-141 506.5 419 63.2
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 3.4e-141 505.8 405 63.5
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 3.4e-141 505.8 405 63.5
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.3e-140 503.8 424 63.0
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 2.9e-140 502.7 431 61.0
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 4.1e-139 498.8 410 63.2
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.2e-138 497.3 425 59.5
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 7.8e-138 494.6 421 59.9
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 1.7e-137 493.4 413 62.2
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.3e-137 493.0 421 59.9
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 4.3e-136 488.8 424 60.1
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 4.3e-136 488.8 415 61.2
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 5.6e-136 488.4 421 61.8
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.2e-133 480.7 303 80.5
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 3.8e-132 475.7 419 58.7
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 7.1e-131 471.5 412 58.7
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 3.5e-130 469.2 415 57.6
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 7.8e-130 468.0 430 58.6
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 3.0e-129 466.1 405 59.8
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 6.6e-129 464.9 438 57.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.1e-126 457.6 409 58.9
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.4e-126 457.2 430 55.6
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 5.8e-125 451.8 429 53.6
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 7.6e-125 451.4 430 57.0
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 2.4e-123 446.4 432 55.8
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 2.4e-123 446.4 428 54.9
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 3.2e-123 446.0 429 54.1
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 4.2e-123 445.7 412 57.5
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.2e-122 444.1 441 53.3
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 1.0e-121 441.0 405 54.3
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 5.6e-120 435.3 431 54.3
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.2e-117 427.6 406 54.7
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.5e-117 427.2 406 55.2
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 3.4e-117 426.0 406 54.9
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 8.4e-116 421.4 404 54.5
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.4e-115 420.6 407 54.1
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 2.4e-115 419.9 406 54.2
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 4.2e-115 419.1 389 55.3
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.2e-114 417.5 432 52.1
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.1e-114 416.8 428 49.8
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.7e-114 416.4 407 53.3
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 7.9e-114 414.8 409 52.6
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.0e-113 414.5 409 52.3
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 1.8e-113 413.7 432 52.1
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 3.9e-113 412.5 422 52.1
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 5.1e-113 412.1 407 52.8
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.5e-112 410.6 406 52.0
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.3e-111 407.5 409 51.6
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.3e-111 407.5 432 51.2
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.6e-111 407.1 434 51.2
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.1e-111 406.8 432 51.6
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 6.2e-111 405.2 354 58.5
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 7.6e-109 398.3 368 52.7
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 1.7e-108 397.1 422 49.5
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 4.9e-108 395.6 426 48.8
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 1.1e-107 394.4 428 49.8
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 1.4e-107 394.0 471 46.3
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.6e-106 390.6 419 49.2
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.1e-106 390.2 411 49.6
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 2.7e-106 389.8 406 52.5
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 2.7e-106 389.8 324 60.8
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 2.7e-106 389.8 410 48.8
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.1e-104 384.4 404 49.8
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.1e-103 380.2 411 50.9
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 6.2e-103 378.6 376 53.5
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 8.2e-103 378.3 407 49.9
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 1.8e-102 377.1 406 48.3
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.0e-100 371.3 328 61.3
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 3.8e-100 369.4 427 51.3
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.9e-96 357.1 423 48.0
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.2e-95 353.6 421 47.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 2.4e-94 350.1 422 45.7
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 2.6e-93 346.7 411 45.3
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.8e-89 334.0 325 56.3
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.3e-87 327.8 371 48.5
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 8.2e-87 325.1 433 43.2
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 7.2e-83 312.0 356 47.8
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 6.3e-79 298.9 330 53.3
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 4.5e-77 292.7 273 57.5
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.7e-74 283.5 374 44.9
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 2.0e-69 267.3 396 39.1
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 6.5e-68 262.3 237 57.0
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 1.5e-67 261.2 367 37.1
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 1.6e-66 257.7 369 39.6
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 1.1e-62 245.0 393 35.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 3.8e-60 236.5 428 34.1
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.7e-58 230.3 205 53.2
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 4.0e-49 199.9 200 45.5
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.9e-43 181.0 208 49.0
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 5.8e-32 142.9 199 40.2
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 3.6e-26 123.6 89 60.7
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.6e-24 115.9 98 56.1
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.3e-20 105.1 291 30.2
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.2e-17 93.2 66 53.0
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.8e-15 87.0 63 54.0
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.9e-15 86.7 57 56.1
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.3e-10 72.0 102 43.1
Ah.01g017160 Amaranthus hybridus HOM05D001726 ORTHO05D001761 3.8e-07 60.5 154 26.6
MBI15_g33471_MAGBIO Magnolia biondii HOM05D001726 ORTHO05D001761 1.4e-06 58.5 157 28.7
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.9e-06 58.2 96 41.7
DCAR_012013 Daucus carota HOM05D001726 ORTHO05D001761 2.4e-06 57.8 173 26.6
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 2.4e-06 57.8 141 26.2
FvH4_1g06720 Fragaria vesca HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
FAN19G1466 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
FAN23G2685 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
FAN26G0969 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
FAN26G3035 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
FAN28G2640 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
RcHm_v2.0_Chr2g0092461 Rosa chinensis HOM05D001726 ORTHO05D001761 3.2e-06 57.4 156 27.6
Potri.006G154000 Populus trichocarpa HOM05D001726 ORTHO05D001761 4.2e-06 57.0 179 26.3
CAN.G309.61 Capsicum annuum HOM05D001726 ORTHO05D001761 5.4e-06 56.6 169 26.6
Lsat_1_v5_gn_6_7580 Lactuca sativa HOM05D001726 ORTHO05D001761 5.4e-06 56.6 158 25.9
Peaxi162Scf00354g00067 Petunia axillaris HOM05D001726 ORTHO05D001761 5.4e-06 56.6 156 26.9
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 5.4e-06 56.6 55 45.5
Actinidia29894 Actinidia chinensis HOM05D001726 ORTHO05D001761 7.1e-06 56.2 156 26.3
Gohir.A08G244300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 7.1e-06 56.2 156 27.6
Gohir.D08G265200 Gossypium hirsutum HOM05D001726 ORTHO05D001761 7.1e-06 56.2 156 27.6
Gorai.004G283100 Gossypium raimondii HOM05D001726 ORTHO05D001761 7.1e-06 56.2 156 27.6
Atru.chr7.1513 Acer truncatum HOM05D001726 ORTHO05D001761 9.3e-06 55.8 156 26.9
Cc06_g10890 Coffea canephora HOM05D001726 ORTHO05D001761 9.3e-06 55.8 158 25.9
MD15G1201900 Malus domestica HOM05D001726 ORTHO05D001761 9.3e-06 55.8 156 26.3
Nitab4.5_0000012g0320 Nicotiana tabacum HOM05D001726 ORTHO05D001761 9.3e-06 55.8 169 26.6


User provided reference genes

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