Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007687 Lotus japonicus HOM05D000617 ORTHO05D236766 3.4e-77 291.6 147 100.0
Lj1g0004712 Lotus japonicus HOM05D000617 ORTHO05D000478 2.6e-16 89.4 155 45.8
Psat5g071000 Pisum sativum HOM05D000617 ORTHO05D000478 6.6e-12 74.7 155 41.3
Medtr3g093030 Medicago truncatula HOM05D000617 ORTHO05D000478 9.5e-11 70.9 150 38.7
Ca_16791_v3 Cicer arietinum L. HOM05D000617 ORTHO05D000478 1.2e-10 70.5 156 37.2
Ca_16807_v3 Cicer arietinum L. HOM05D000617 ORTHO05D000478 1.2e-10 70.5 156 37.2
Glyma.04G226600 Glycine max HOM05D000617 ORTHO05D000478 3.6e-10 68.9 154 38.3
Phvul.009G038900 Phaseolus vulgaris HOM05D000617 ORTHO05D000478 3.6e-10 68.9 153 41.2
VMungo1309G1171 Vigna mungo HOM05D000617 ORTHO05D000478 6.8e-09 64.7 154 37.7
Lalb_Chr11g0067481 Lupinus albus HOM05D000617 ORTHO05D000478 8.9e-09 64.3 153 34.6
Peaxi162Scf00815g00125 Petunia axillaris HOM05D000617 ORTHO05D000478 5.8e-08 61.6 104 40.4
ATR0579G008 Amborella trichopoda HOM05D000617 ORTHO05D000478 7.5e-08 61.2 141 36.9
CAN.G65.149 Capsicum annuum HOM05D000617 ORTHO05D000478 1.3e-07 60.5 118 35.6
SEGI_33483 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.7e-07 60.1 31 87.1
Gohir.D04G000015 Gossypium hirsutum HOM05D000617 ORTHO05D000478 2.2e-07 59.7 144 34.7
Gorai.012G001500 Gossypium raimondii HOM05D000617 ORTHO05D000478 2.2e-07 59.7 144 34.7
Hma1.2p1_1867F.1_g305900 Hydrangea macrophylla HOM05D000617 ORTHO05D000478 2.2e-07 59.7 127 37.0
SEGI_29265 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 2.2e-07 59.7 29 89.7
Cpa.g.sc3.168 Carica papaya HOM05D000617 ORTHO05D000478 3.7e-07 58.9 29 89.7
SEGI_14925 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 4.9e-07 58.5 29 86.2
SEGI_18296 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 4.9e-07 58.5 29 86.2
Ciclev10020281m.g Citrus clementina HOM05D000617 ORTHO05D000478 6.4e-07 58.2 29 82.8
Lj3A893G79 Lonicera japonica HOM05D000617 ORTHO05D000478 6.4e-07 58.2 29 86.2
AUR62012882 Chenopodium quinoa HOM05D000617 ORTHO05D000478 8.3e-07 57.8 153 34.6
TWI39G1061 Tripterygium wilfordii HOM05D000617 ORTHO05D000478 8.3e-07 57.8 119 37.8
arahy.Tifrunner.gnm1.ann1.SJ2LR7 Arachis hypogaea HOM05D000617 ORTHO05D000478 1.1e-06 57.4 148 37.8
Cpa.g.sc3.169 Carica papaya HOM05D000617 ORTHO05D000478 1.1e-06 57.4 29 86.2
SEGI_07607 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.1e-06 57.4 29 82.8
SEGI_15440 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.1e-06 57.4 29 82.8
SEGI_22735 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.1e-06 57.4 29 82.8
arahy.Tifrunner.gnm1.ann1.1SV43C Arachis hypogaea HOM05D000617 ORTHO05D000478 1.4e-06 57.0 148 37.8
DCAR_009171 Daucus carota HOM05D000617 ORTHO05D000478 1.4e-06 57.0 31 83.9
QL09p006723 Quercus lobata HOM05D000617 ORTHO05D000478 1.4e-06 57.0 148 33.8
RcHm_v2.0_Chr1g0383081 Rosa chinensis HOM05D000617 ORTHO05D000478 1.4e-06 57.0 145 34.5
SEGI_06815 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.4e-06 57.0 29 82.8
SEGI_09055 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.4e-06 57.0 29 82.8
BcaB02g11047 Brassica carinata HOM05D000617 ORTHO05D000478 1.9e-06 56.6 29 86.2
BcaB02g11050 Brassica carinata HOM05D000617 ORTHO05D000478 1.9e-06 56.6 29 86.2
CDE04G2805 Ceratophyllum demersum HOM05D000617 ORTHO05D000478 1.9e-06 56.6 119 36.1
FAN10G0296 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.9e-06 56.6 44 61.4
PGSC0003DMG401027023 Solanum tuberosum HOM05D000617 ORTHO05D000478 1.9e-06 56.6 155 31.6
Thecc.03G210500 Theobroma cacao HOM05D000617 ORTHO05D000478 1.9e-06 56.6 29 82.8
CANSAT21G1037 Cannabis sativa HOM05D000617 ORTHO05D000478 2.4e-06 56.2 142 35.2
CiPaw.06G039500 Carya illinoinensis HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
AUR62027106 Chenopodium quinoa HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
Eucgr.K00046 Eucalyptus grandis HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
Eucgr.K00453 Eucalyptus grandis HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
FAN03G2367 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.4e-06 56.2 134 31.3
MD01G1229800 Malus domestica HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
Prupe.2G320500 Prunus persica HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
QL09p006733 Quercus lobata HOM05D000617 ORTHO05D000478 2.4e-06 56.2 29 82.8
Hund00382 Selenicereus undatus HOM05D000617 ORTHO05D000478 2.4e-06 56.2 119 38.7
SEGI_27413 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 2.4e-06 56.2 31 80.6
PGR142G2153 Punica granatum HOM05D000617 ORTHO05D000478 3.2e-06 55.8 28 89.3
Zm00001eb304530 Zea mays HOM05D000617 ORTHO05D000478 3.2e-06 55.8 29 82.8
BcaC08g43347 Brassica carinata HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
BcaC08g43938 Brassica carinata HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
A05p19370 Brassica napus HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
A06p02230 Brassica napus HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
C06p13310 Brassica napus HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
BolC6t35798H Brassica oleracea HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
BolC6t36491H Brassica oleracea HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
BraA05t20841Z Brassica rapa HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
BraA06t23433Z Brassica rapa HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
ECA233G3682 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.1e-06 55.5 28 85.7
FvH4_7g33061 Fragaria vesca HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
FAN10G1892 Fragaria x ananassa HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
Lsat_1_v5_gn_8_3941 Lactuca sativa HOM05D000617 ORTHO05D000478 4.1e-06 55.5 147 31.3
MBI17_g32882_MAGBIO Magnolia biondii HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 79.3
SalBow4G0025 Salvia bowleyana HOM05D000617 ORTHO05D000478 4.1e-06 55.5 28 85.7
SalBow4G0623 Salvia bowleyana HOM05D000617 ORTHO05D000478 4.1e-06 55.5 28 85.7
Sp1g38410 Schrenkiella parvula HOM05D000617 ORTHO05D000478 4.1e-06 55.5 29 82.8
Atru.chr12.2487 Acer truncatum HOM05D000617 ORTHO05D000478 5.4e-06 55.1 29 79.3
HanXRQChr03g0060401 Helianthus annuus HOM05D000617 ORTHO05D000478 5.4e-06 55.1 149 32.9
Aqoxy5G04364 Aquilegia oxysepala HOM05D000617 ORTHO05D000478 7.0e-06 54.7 152 31.6
C06p07060 Brassica napus HOM05D000617 ORTHO05D000478 7.0e-06 54.7 29 82.8
CDE12G0706 Ceratophyllum demersum HOM05D000617 ORTHO05D000478 7.0e-06 54.7 150 32.0
Nitab4.5_0000115g0100 Nicotiana tabacum HOM05D000617 ORTHO05D000063 7.0e-06 54.7 28 82.1
Solyc06g073060.3 Solanum lycopersicum HOM05D000617 ORTHO05D000478 7.0e-06 54.7 28 82.1
Sopen06g029410 Solanum pennellii HOM05D000617 ORTHO05D000478 7.0e-06 54.7 28 82.1
EL10Ac9g22068 Beta vulgaris HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 79.3
CSS0027539 Camellia sinensis var. sinensis HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 79.3
CSS0039417 Camellia sinensis var. sinensis HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 79.3
Dinv17289 Davidia involucrata HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 79.3
Thhalv10011481m.g Eutrema salsugineum HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 79.3
Hma1.2p1_0245F.1_g101540 Hydrangea macrophylla HOM05D000617 ORTHO05D000478 9.2e-06 54.3 29 82.8


User provided reference genes

Program Settings