Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.0e-99 366.7 178 100.0
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 5.8e-87 324.3 177 87.6
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 3.7e-86 321.6 180 86.1
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.1e-85 320.1 173 87.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 9.2e-85 317.0 173 85.5
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 2.0e-84 315.8 173 86.1
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.7e-84 315.5 173 85.5
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.7e-84 315.5 173 85.5
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 6.0e-84 314.3 180 83.3
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 6.6e-83 310.8 173 83.2
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.5e-82 309.7 178 82.0
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 4.7e-81 304.7 178 78.7
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 6.2e-81 304.3 175 80.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.1e-81 303.9 175 80.6
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.1e-80 303.5 173 81.5
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.4e-80 303.1 169 83.4
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.4e-80 303.1 174 79.9
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 5.2e-80 301.2 173 80.3
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.5e-79 299.7 173 79.8
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.6e-79 298.9 174 83.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 3.4e-79 298.5 174 79.9
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 4.4e-79 298.1 174 78.7
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 7.5e-79 297.4 173 81.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 7.5e-79 297.4 174 79.3
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 9.9e-79 297.0 174 79.3
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 2.2e-78 295.8 174 78.7
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.9e-78 295.4 178 77.5
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.9e-78 295.4 163 84.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 4.9e-78 294.7 171 80.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 179 78.2
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.9e-77 292.7 178 75.8
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.1e-77 291.6 170 77.6
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 5.4e-77 291.2 166 80.7
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 9.2e-77 290.4 166 82.5
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.2e-76 290.0 166 81.3
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.6e-76 289.7 173 76.3
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.1e-76 289.3 172 79.7
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.1e-76 289.3 166 81.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 171 76.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.5e-76 288.5 166 81.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.5e-76 288.5 178 75.3
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.8e-76 287.3 178 75.3
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.8e-76 287.3 166 80.1
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.3e-75 286.6 173 76.3
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.7e-75 286.2 166 79.5
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.7e-75 286.2 166 79.5
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.7e-75 286.2 174 75.3
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 3.0e-75 285.4 171 74.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 3.9e-75 285.0 170 74.7
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 5.1e-75 284.6 170 75.9
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 6.6e-75 284.3 166 78.9
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-74 283.5 166 78.9
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.5e-74 282.3 172 75.6
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 3.3e-74 282.0 167 74.9
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.3e-74 282.0 166 78.3
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.3e-74 281.6 173 74.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.2e-73 280.0 166 76.5
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.2e-73 280.0 173 73.4
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.6e-73 279.6 169 75.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.6e-73 279.6 170 74.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.6e-73 279.6 166 75.9
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.6e-73 279.6 173 72.8
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.1e-73 279.3 166 77.7
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.1e-73 279.3 162 79.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 4.7e-73 278.1 170 73.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 8.1e-73 277.3 167 76.0
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.1e-72 276.9 168 74.4
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.4e-72 276.6 166 74.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.3e-72 275.8 170 72.9
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 2.3e-72 275.8 166 76.5
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.3e-72 275.8 167 75.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 6.8e-72 274.2 166 74.1
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 6.8e-72 274.2 177 75.1
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 8.9e-72 273.9 166 75.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 8.9e-72 273.9 166 74.7
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.2e-71 273.5 170 72.4
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 75.9
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 75.9
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-71 271.6 166 74.1
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 4.4e-71 271.6 166 74.1
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.4e-71 271.6 206 64.1
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 5.8e-71 271.2 172 71.5
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 7.6e-71 270.8 170 72.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 7.6e-71 270.8 168 74.4
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 7.6e-71 270.8 163 77.3
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.9e-71 270.4 169 70.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.2e-70 269.2 157 77.7
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.9e-70 268.9 166 71.7
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 6.4e-70 267.7 165 76.4
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.4e-69 266.5 172 69.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 1.9e-69 266.2 171 70.8
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.9e-69 266.2 167 71.9
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.2e-69 265.4 173 70.5
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.4e-69 264.6 171 71.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.6e-68 263.1 167 70.7
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.7e-68 262.3 170 70.6
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.7e-68 262.3 234 57.3
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 4.6e-68 261.5 170 70.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 7.8e-68 260.8 167 70.1
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.3e-67 259.2 167 70.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 3.0e-67 258.8 166 70.5
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.6e-67 257.7 167 70.1
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-66 256.9 173 67.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.5e-66 256.5 167 70.7
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.5e-66 255.8 167 69.5
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 2.5e-66 255.8 167 69.5
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 3.3e-66 255.4 167 70.1
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.3e-66 255.0 167 70.1
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 4.3e-66 255.0 172 70.3
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 7.3e-66 254.2 167 68.9
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.6e-65 253.1 167 67.1
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.1e-65 252.7 166 71.7
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.6e-65 251.9 166 70.5
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.7e-65 251.5 154 74.7
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 4.0e-64 248.4 167 68.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-63 246.5 159 71.7
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.5e-63 246.5 159 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.0e-63 246.1 165 68.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.6e-63 245.7 159 71.1
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 4.4e-63 245.0 173 63.0
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.6e-63 244.2 173 64.2
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 7.6e-63 244.2 174 64.9
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 9.9e-63 243.8 159 70.4
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.3e-62 243.4 171 70.8
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 8.4e-62 240.7 167 64.1
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 7.8e-60 234.2 179 61.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 3.9e-59 231.9 164 65.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.1e-59 231.5 151 72.2
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 2.5e-58 229.2 170 61.2
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.3e-58 228.4 168 63.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 5.6e-58 228.0 168 66.7
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 3.1e-56 222.2 166 63.3
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 2.2e-54 216.1 165 60.0
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.9e-53 213.0 167 58.1
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.6e-52 208.4 127 81.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.8e-48 196.4 166 54.8
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.4e-48 196.1 107 81.3
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.1e-44 183.0 109 76.1
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.7e-43 177.9 111 75.7
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 3.3e-42 175.6 175 49.1
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 7.4e-42 174.5 109 71.6
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 9.0e-40 167.5 115 66.1
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 9.0e-40 167.5 169 53.3
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 2.2e-38 162.9 174 54.6
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 8.4e-38 161.0 104 72.1
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-37 160.6 99 74.7
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.5e-37 159.5 99 73.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 2.7e-36 156.0 99 73.7
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-34 150.6 106 64.2
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-34 150.6 106 64.2
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 6.9e-32 141.4 85 77.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-30 137.5 79 78.5
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-30 137.5 173 48.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 2.1e-28 129.8 144 53.5
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 6.1e-28 128.3 167 37.1
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 2.5e-21 106.3 121 47.9
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.4e-19 100.5 181 32.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.4e-18 94.7 63 63.5
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 4.8e-17 92.0 61 70.5
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.2e-17 91.3 67 61.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.2e-14 83.2 67 55.2
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 2.9e-14 82.8 79 48.1
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.9e-13 80.1 68 58.8
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.1e-10 70.9 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 8.5e-06 54.7 35 71.4


User provided reference genes

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