Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.2e-146 522.3 270 100.0
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.9e-89 333.2 292 67.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 3.2e-89 332.4 296 66.9
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 5.5e-89 331.6 295 67.8
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-86 323.6 294 66.3
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.1e-76 287.7 300 60.0
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 7.2e-73 278.1 247 64.8
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.5e-70 270.4 267 61.8
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 9.7e-70 267.7 307 56.0
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.2e-69 266.5 267 61.4
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 2.8e-69 266.2 274 61.3
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 2.8e-69 266.2 274 61.3
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.3e-69 265.0 263 60.5
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.4e-68 263.8 273 58.6
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.4e-68 263.1 249 62.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-68 263.1 257 59.9
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 9.1e-68 261.2 288 58.7
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.2e-67 260.8 274 57.7
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.5e-67 260.4 262 59.9
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 5.9e-67 258.5 302 57.9
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 7.7e-67 258.1 278 58.3
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 7.7e-67 258.1 298 57.4
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.2e-66 256.5 286 56.6
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.2e-66 256.5 284 56.3
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.9e-66 256.1 290 56.9
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.8e-66 255.8 306 55.2
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.0e-66 255.4 284 57.0
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 6.5e-66 255.0 315 55.2
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 7.2e-65 251.5 312 54.8
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 9.4e-65 251.1 323 56.0
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.2e-64 250.8 287 57.1
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.6e-64 250.4 232 64.7
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 3.6e-64 249.2 290 57.9
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.0e-63 247.7 249 60.2
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 3.0e-63 246.1 287 56.1
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.6e-62 243.0 286 53.8
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.3e-62 242.7 289 56.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 5.7e-62 241.9 292 54.1
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 9.7e-62 241.1 283 55.1
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-61 239.6 297 53.2
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 8.2e-61 238.0 298 53.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.8e-60 236.9 297 52.9
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.3e-60 235.3 270 55.6
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.3e-60 235.3 298 53.0
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.3e-60 235.3 254 57.5
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.2e-59 234.2 285 53.0
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 2.0e-59 233.4 318 50.0
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.0e-59 233.4 266 57.9
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.7e-58 230.3 277 54.2
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.5e-58 228.0 261 56.7
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 5.5e-57 225.3 288 54.2
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 9.4e-57 224.6 281 53.7
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.2e-56 224.2 294 53.1
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.6e-56 223.8 285 52.6
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.7e-56 222.2 258 56.6
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.3e-55 219.9 282 51.4
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 5.2e-55 218.8 271 53.9
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.8e-55 218.0 261 55.6
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 8.8e-55 218.0 256 57.4
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.2e-54 217.6 282 51.1
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-54 217.2 282 51.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.0e-54 216.9 273 53.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.7e-53 213.8 261 54.4
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.3e-53 211.8 261 54.0
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.1e-52 211.1 285 52.6
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.8e-52 210.3 281 52.3
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.4e-52 209.9 283 51.9
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.6e-51 207.2 300 49.3
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.0e-50 204.5 286 51.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.3e-50 204.1 309 47.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 8.5e-50 201.4 270 50.4
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 3.2e-49 199.5 306 47.1
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.7e-48 196.4 273 50.5
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.7e-48 195.7 270 51.5
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.1e-48 195.3 250 55.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.0e-47 194.5 274 53.6
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.0e-47 194.5 274 53.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.0e-47 192.6 300 48.3
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 5.7e-46 188.7 297 48.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.8e-45 186.4 314 43.6
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 6.3e-45 185.3 296 47.6
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.1e-44 184.5 285 49.1
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-44 183.3 282 46.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 5.4e-44 182.2 303 44.6
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 5.9e-43 178.7 306 46.4
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 5.9e-43 178.7 313 44.7
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 6.6e-42 175.3 289 44.6
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 8.6e-42 174.9 283 44.9
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 4.2e-41 172.6 297 47.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.2e-40 171.0 328 41.5
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.2e-40 171.0 290 43.8
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.1e-40 170.2 292 46.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.8e-40 169.9 294 45.9
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.1e-40 168.7 260 47.3
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.0e-39 167.9 306 43.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.0e-39 167.9 252 51.2
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-39 167.5 368 38.6
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 6.8e-39 165.2 276 45.3
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 4.4e-38 162.5 262 45.8
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 4.4e-38 162.5 259 45.9
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 5.7e-38 162.2 311 44.1
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 7.5e-38 161.8 292 44.5
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 9.8e-38 161.4 185 56.2
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 1.3e-37 161.0 329 41.0
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.3e-37 161.0 324 42.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.2e-37 160.2 289 45.3
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.4e-37 158.7 262 45.4
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.1e-36 157.9 316 40.5
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 2.4e-36 156.8 303 41.6
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 5.4e-36 155.6 316 39.2
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 5.4e-36 155.6 316 39.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 9.2e-36 154.8 316 40.2
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 9.2e-36 154.8 316 40.2
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.6e-35 154.1 261 44.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.5e-35 152.9 266 42.9
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 3.5e-35 152.9 269 44.6
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.6e-35 152.5 290 43.1
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.8e-35 151.8 266 44.7
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.8e-35 151.8 285 44.6
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.7e-34 150.6 286 42.7
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.7e-34 150.6 329 41.3
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 3.9e-34 149.4 236 46.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 8.6e-34 148.3 275 44.7
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.5e-33 147.5 267 43.4
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 5.6e-33 145.6 254 41.7
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.2e-32 144.4 120 70.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.4e-31 141.0 272 42.6
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.1e-31 139.8 200 52.0
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.1e-31 139.8 354 39.0
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 6.8e-31 138.7 263 43.3
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 6.8e-31 138.7 270 41.1
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 8.9e-31 138.3 154 57.8
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.0e-30 137.1 218 45.0
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.5e-30 135.2 261 42.9
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.2e-29 133.7 317 37.2
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.4e-28 130.2 262 43.9
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.2e-28 129.8 211 43.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.2e-27 127.9 295 39.0
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.6e-27 127.5 263 43.0
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.8e-27 125.2 261 41.4
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.0e-26 122.5 246 42.3
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.0e-26 122.5 246 42.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 6.6e-26 122.1 300 38.0
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 5.6e-25 119.0 217 45.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 9.5e-25 118.2 158 48.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.6e-24 117.5 258 37.2
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.8e-24 116.7 260 42.3
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.6e-24 116.3 187 47.1
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.9e-21 105.9 243 40.7
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 6.4e-21 105.5 95 64.2
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 2.3e-18 97.1 82 67.1
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.8e-15 87.4 269 36.8
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.8e-15 85.5 260 31.9
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 6.8e-15 85.5 243 34.2
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.5e-14 84.3 120 50.0
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 3.4e-14 83.2 247 36.0
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 4.9e-13 79.3 72 61.1
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.4e-12 77.8 143 42.7
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 3.6e-08 63.2 292 27.7
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 6.2e-08 62.4 356 25.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 1.1e-07 61.6 321 27.4
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.4e-07 61.2 117 41.9
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 2.4e-07 60.5 299 27.8
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.0e-07 59.7 355 25.6
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 6.8e-07 58.9 352 25.0
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 6.8e-07 58.9 352 25.0
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 6.8e-07 58.9 72 51.4
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 2.0e-06 57.4 91 45.1
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 2.6e-06 57.0 92 43.5
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 3.4e-06 56.6 94 41.5
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.4e-06 56.6 356 25.0
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 3.4e-06 56.6 99 40.4
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 4.4e-06 56.2 312 27.9
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 5.8e-06 55.8 92 46.7
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 7.6e-06 55.5 291 27.1
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 9.9e-06 55.1 336 25.9


User provided reference genes

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