Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.2e-261 906.0 463 100.0
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.0e-79 301.6 473 43.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.0e-78 297.4 607 37.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 9.1e-68 261.9 431 40.1
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 6.3e-61 239.2 229 55.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 4.1e-60 236.5 491 36.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.6e-56 224.6 198 58.6
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.7e-51 207.2 740 27.7
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.3e-49 199.1 442 35.7
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.3e-49 199.1 442 35.7
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 6.8e-47 192.6 369 39.0
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 8.9e-47 192.2 362 36.2
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.6e-46 190.7 362 36.2
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 9.8e-46 188.7 239 46.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.2e-44 183.7 485 35.5
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 5.2e-31 139.8 226 39.4
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.9e-29 134.0 167 45.5
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.6e-27 126.7 205 40.0
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.6e-24 118.2 226 34.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.1e-24 117.9 376 29.8
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.7e-21 108.2 424 27.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.7e-21 108.2 398 29.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 3.8e-21 107.1 440 25.7
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.9e-21 106.7 196 33.7
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.9e-20 104.8 571 25.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.4e-20 104.4 200 34.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 9.3e-20 102.4 177 34.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.6e-19 101.7 207 35.3
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.6e-19 101.7 461 27.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.1e-19 101.3 404 26.7
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.0e-18 99.0 213 32.4
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.3e-18 98.6 202 32.7
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.0e-18 97.4 140 40.7
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.0e-18 97.4 201 36.3
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-18 96.3 203 35.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.5e-17 94.4 203 34.5
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.5e-17 94.4 153 35.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 4.3e-17 93.6 198 31.3
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 9.6e-17 92.4 97 50.5
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.3e-16 92.0 210 32.9
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.6e-16 91.7 200 31.5
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 2.1e-16 91.3 185 35.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.8e-16 90.9 131 35.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 3.6e-16 90.5 200 34.5
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 3.6e-16 90.5 401 25.7
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.1e-16 89.4 208 32.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.1e-15 89.0 377 24.9
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.4e-15 88.6 192 30.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.8e-15 88.2 406 25.6
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.4e-15 87.8 157 34.4
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 5.3e-15 86.7 121 38.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.5e-14 85.1 262 29.0
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.0e-14 84.7 263 26.6
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.6e-14 84.3 350 26.0
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.5e-14 83.6 112 41.1
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.8e-14 83.2 359 23.7
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.3e-13 82.0 108 41.7
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.3e-13 82.0 195 32.3
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-13 82.0 108 41.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.7e-13 81.6 367 27.0
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.2e-13 81.3 178 32.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.2e-13 81.3 108 41.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.9e-13 80.9 200 27.5
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.9e-13 80.1 136 39.0
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 6.4e-13 79.7 175 33.7
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.4e-13 79.7 160 33.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 6.4e-13 79.7 158 30.4
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 8.4e-13 79.3 194 35.1
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 8.4e-13 79.3 193 32.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.4e-13 79.3 128 35.2
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-12 79.0 128 35.9
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.1e-12 79.0 229 27.1
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.4e-12 78.6 344 25.6
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.4e-12 77.8 152 32.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.4e-12 77.8 152 32.9
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.4e-12 77.8 171 34.5
Aqoxy3G01606 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 3.2e-12 77.4 387 26.1
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.2e-12 77.4 195 31.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.2e-12 77.4 121 33.9
TPR.G39827 Trifolium pratense HOM05D006236 ORTHO05D003486 3.2e-12 77.4 104 43.3
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 4.2e-12 77.0 152 32.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.4e-12 76.6 158 34.8
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 7.1e-12 76.3 390 25.4
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 9.3e-12 75.9 157 35.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 9.3e-12 75.9 206 30.1
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 9.3e-12 75.9 220 26.4
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 9.3e-12 75.9 145 34.5
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-11 75.5 192 33.9
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.2e-11 75.5 225 28.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-11 75.5 439 24.8
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.2e-11 75.5 197 32.0
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.2e-11 75.5 126 35.7
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.2e-11 75.5 107 38.3
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.6e-11 75.1 160 31.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.6e-11 75.1 153 35.9
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.7e-11 74.3 183 31.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.7e-11 74.3 373 24.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.5e-11 73.9 135 39.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 3.5e-11 73.9 160 31.9
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.6e-11 73.6 183 28.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-11 73.6 113 36.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 7.9e-11 72.8 195 34.9
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 7.9e-11 72.8 144 38.9
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.9e-11 72.8 354 25.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.0e-10 72.4 135 39.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.8e-10 71.6 201 28.9
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 2.3e-10 71.2 373 25.5
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.3e-10 71.2 151 30.5
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.0e-10 70.9 102 38.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.0e-10 70.9 108 34.3
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 3.0e-10 70.9 99 38.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.9e-10 70.5 380 25.5
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 6.7e-10 69.7 324 25.6
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.7e-10 69.3 112 36.6
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 8.7e-10 69.3 203 29.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 8.7e-10 69.3 112 39.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.7e-10 69.3 104 37.5
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 8.7e-10 69.3 109 34.9
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-09 68.9 354 23.4
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.5e-09 68.6 355 27.0
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.9e-09 68.2 194 32.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.9e-09 68.2 194 32.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.9e-09 68.2 114 35.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.9e-09 68.2 178 32.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.5e-09 67.8 150 32.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.5e-09 67.8 134 35.1
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.5e-09 67.8 128 29.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.5e-09 67.8 365 25.5
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.6e-09 66.6 320 23.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 7.4e-09 66.2 135 34.1
Aqoxy1G03360 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 9.6e-09 65.9 431 25.5
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 9.6e-09 65.9 128 28.9
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.3e-08 65.5 150 31.3
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.3e-08 65.5 379 25.1
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-08 65.5 255 25.5
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.1e-08 64.7 206 30.1
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-08 64.7 307 23.8
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.1e-08 64.7 350 24.0
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.8e-08 64.3 101 41.6
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 4.8e-08 63.5 108 36.1
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.2e-08 63.2 330 25.2
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 8.1e-08 62.8 75 42.7
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.4e-07 62.0 94 38.3
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.4e-07 62.0 123 30.9
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.8e-07 61.6 200 30.5
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.8e-07 61.6 107 33.6
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 4.0e-07 60.5 375 24.5
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 5.3e-07 60.1 113 32.7
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.3e-07 60.1 354 22.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.9e-07 59.7 157 31.8
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 6.9e-07 59.7 404 22.0
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.2e-06 58.9 99 36.4
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 2.0e-06 58.2 105 32.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.6e-06 57.8 347 22.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 2.6e-06 57.8 160 26.2
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.6e-06 57.8 354 22.3
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 2.6e-06 57.8 360 22.2
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.4e-06 57.4 370 23.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.5e-06 57.0 141 27.7
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 4.5e-06 57.0 141 27.7
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 4.5e-06 57.0 140 26.4
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.5e-06 57.0 353 22.9
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 5.8e-06 56.6 107 31.8
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.8e-06 56.6 34 61.8
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 5.8e-06 56.6 99 31.3
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.6e-06 56.2 140 26.4


User provided reference genes

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