Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 2.0e-106 389.0 187 100.0
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 3.0e-86 322.0 187 84.0
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 3.9e-86 321.6 183 84.7
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 1.5e-82 309.7 183 82.5
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 7.7e-82 307.4 183 82.5
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 2.2e-81 305.8 182 81.3
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 8.5e-81 303.9 182 81.3
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 5.5e-80 301.2 188 81.4
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 1.8e-78 296.2 188 80.9
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 3.0e-78 295.4 187 77.5
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 3.7e-76 288.5 193 77.2
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 5.0e-65 251.5 188 67.6
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 5.5e-64 248.1 182 66.5
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 5.5e-64 248.1 182 66.5
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 7.2e-64 247.7 187 64.2
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 1.6e-63 246.5 189 67.2
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 1.6e-63 246.5 191 66.5
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 6.1e-63 244.6 181 68.0
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 1.0e-62 243.8 183 66.7
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 1.4e-62 243.4 182 65.4
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 3.0e-62 242.3 187 64.7
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 4.0e-62 241.9 188 63.8
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 4.4e-61 238.4 187 66.3
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 5.7e-61 238.0 187 66.3
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 7.5e-61 237.7 187 65.8
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.2e-60 236.1 187 65.8
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 4.8e-60 235.0 187 62.6
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 6.3e-60 234.6 187 61.5
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 8.2e-60 234.2 187 62.0
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 1.8e-59 233.0 184 62.5
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 2.4e-59 232.6 183 65.6
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 7.0e-59 231.1 185 62.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 9.1e-59 230.7 187 61.0
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 4.5e-58 228.4 186 64.0
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 3.8e-57 225.3 187 59.9
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 1.5e-56 223.4 181 62.4
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 1.9e-56 223.0 182 59.3
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 1.9e-56 223.0 184 61.4
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 9.4e-56 220.7 186 59.7
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 1.6e-55 219.9 188 61.2
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.6e-55 219.9 181 60.8
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 2.7e-55 219.2 181 61.9
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 4.7e-55 218.4 187 60.4
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 6.1e-55 218.0 188 59.0
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 6.1e-55 218.0 185 60.0
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 6.1e-55 218.0 181 61.3
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 8.0e-55 217.6 186 58.1
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 8.0e-55 217.6 181 61.3
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 2.3e-54 216.1 183 62.3
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 3.0e-54 215.7 183 62.3
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 5.2e-54 214.9 182 60.4
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 5.2e-54 214.9 182 60.4
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 2.6e-53 212.6 182 59.9
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 2.6e-53 212.6 186 59.7
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 9.8e-53 210.7 173 59.5
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 1.7e-52 209.9 129 76.0
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 2.2e-52 209.5 188 58.5
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 3.7e-52 208.8 181 57.5
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 8.3e-52 207.6 146 68.5
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 8.3e-52 207.6 187 57.8
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 1.1e-51 207.2 164 63.4
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.4e-51 206.8 163 63.2
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 2.4e-51 206.1 190 57.4
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 3.1e-51 205.7 185 58.4
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 4.1e-51 205.3 187 56.7
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 4.1e-51 205.3 185 59.5
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 4.1e-51 205.3 185 59.5
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.0e-49 200.7 132 71.2
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 2.2e-49 199.5 183 59.0
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 2.9e-49 199.1 184 55.4
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.8e-49 198.7 169 59.2
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 5.0e-49 198.4 190 57.4
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 1.5e-48 196.8 192 55.7
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 1.5e-48 196.8 188 57.4
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 1.9e-48 196.4 150 64.0
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 2.5e-48 196.1 186 59.1
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 2.5e-48 196.1 182 56.6
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 7.2e-48 194.5 187 53.5
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 1.2e-47 193.7 159 63.5
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 3.6e-47 192.2 182 56.6
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 3.6e-47 192.2 188 56.9
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 3.6e-47 192.2 188 56.9
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 6.1e-47 191.4 132 70.5
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 6.1e-47 191.4 188 56.4
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 8.0e-47 191.0 189 57.7
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 1.4e-46 190.3 188 55.9
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 1.4e-46 190.3 188 55.9
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 2.3e-46 189.5 132 69.7
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 3.0e-46 189.1 132 69.7
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 4.0e-46 188.7 132 69.7
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 4.0e-46 188.7 132 69.7
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.2e-45 187.2 124 71.8
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 7.5e-45 184.5 187 54.0
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 2.2e-44 183.0 128 71.1
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 3.1e-43 179.1 114 73.7
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.2e-42 177.2 184 51.1
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 3.8e-41 172.2 117 66.7
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 8.0e-39 164.5 147 55.8
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 5.2e-38 161.8 190 47.9
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 8.3e-36 154.5 184 49.5
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 2.4e-35 152.9 138 55.1
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 2.5e-32 142.9 92 70.7
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 5.6e-32 141.7 183 45.9
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 3.6e-31 139.0 124 58.9
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 3.2e-27 125.9 116 55.2
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 5.4e-27 125.2 181 42.5
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 5.6e-24 115.2 94 58.5
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 3.2e-19 99.4 102 44.1
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 9.2e-19 97.8 113 49.6
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 1.2e-18 97.4 93 50.5
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 1.1e-16 90.9 187 35.8
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 2.0e-13 80.1 108 46.3
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.8e-06 55.1 54 59.3


User provided reference genes

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