Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 4.5e-46 187.6 96 100.0
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 3.4e-33 144.8 96 76.0
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.9e-32 141.7 97 77.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.4e-31 139.4 97 74.2
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 3.2e-31 138.3 96 74.0
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.2e-30 136.3 94 74.5
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 7.3e-28 127.1 96 68.8
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 9.5e-28 126.7 95 70.5
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.4e-26 122.9 96 65.6
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.5e-25 119.4 96 63.5
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.4e-25 117.9 96 61.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.8e-25 117.5 96 63.5
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.7e-24 115.9 96 62.5
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 3.7e-24 114.8 95 64.2
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.4e-24 114.0 96 62.5
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 8.3e-24 113.6 97 62.9
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.1e-23 113.2 98 65.3
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 9.2e-23 110.2 87 65.5
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 4.6e-22 107.8 96 60.4
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 1.0e-21 106.7 80 67.5
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 2.3e-21 105.5 96 51.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 5.1e-21 104.4 87 56.3
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.1e-20 103.2 96 59.4
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.5e-20 102.8 96 59.4
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 1.5e-20 102.8 94 60.6
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 3.3e-20 101.7 94 61.7
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-19 99.8 91 58.2
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.2e-19 99.8 91 58.2
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.1e-19 99.0 87 63.2
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.6e-19 98.2 98 57.1
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.8e-18 95.9 96 55.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-17 93.2 87 57.5
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.0e-17 92.4 85 60.0
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 2.4e-15 85.5 87 50.6
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.1e-15 84.7 96 49.0
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 5.4e-15 84.3 87 49.4
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 5.4e-15 84.3 86 50.0
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.1e-14 82.4 95 48.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.1e-14 82.4 88 54.5
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 6.0e-14 80.9 70 62.9
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 6.0e-14 80.9 97 50.5
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 7.8e-14 80.5 90 52.2
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.3e-13 79.7 87 46.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.5e-12 76.3 86 57.0
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 1.9e-12 75.9 95 45.3
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.3e-12 75.1 85 51.8
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 1.8e-10 69.3 97 47.4
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.1e-10 68.6 95 46.3
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 3.1e-10 68.6 84 42.9
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 3.1e-10 68.6 89 50.6
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.1e-10 68.6 78 52.6
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 5.2e-10 67.8 86 47.7
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 5.2e-10 67.8 86 45.3
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 6.8e-10 67.4 94 44.7
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 8.9e-10 67.0 95 46.3
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-09 66.6 90 45.6
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.2e-09 66.6 90 45.6
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 3.4e-09 65.1 92 37.0
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.8e-09 64.3 90 46.7
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.6e-09 63.9 85 47.1
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 9.9e-09 63.5 95 44.2
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 1.7e-08 62.8 90 43.3
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.7e-08 62.8 86 48.8
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.7e-08 62.8 87 43.7
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.2e-08 62.4 85 42.4
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.2e-08 62.4 89 43.8
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.9e-08 62.0 86 47.7
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.8e-08 61.6 92 42.4
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.4e-08 60.8 86 46.5
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.4e-07 59.7 88 40.9
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.4e-07 59.7 86 39.5
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 88 40.9
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.1e-07 57.4 88 38.6
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.3e-07 57.0 88 38.6
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 9.3e-07 57.0 85 43.5
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.1e-06 55.8 94 36.2
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 2.1e-06 55.8 89 40.4
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.1e-06 55.8 85 42.4
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.1e-06 55.8 85 42.4
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 2.1e-06 55.8 78 44.9
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.5e-06 55.1 86 40.7
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 4.6e-06 54.7 85 40.0
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.0e-06 54.3 86 41.9
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.8e-06 53.9 98 39.8


User provided reference genes

Program Settings