Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.8e-72 273.5 134 100.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.6e-57 224.9 131 82.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 8.0e-57 223.8 134 79.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 5.7e-55 217.6 131 79.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.2e-54 215.7 130 80.0
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.8e-54 214.5 131 79.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 9.1e-53 210.3 131 77.9
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-51 206.5 134 76.1
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.3e-51 206.5 135 74.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.9e-51 205.3 134 73.1
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 8.5e-51 203.8 132 74.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.9e-50 202.6 129 73.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.2e-50 201.4 122 75.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.5e-50 201.1 135 71.1
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.6e-49 199.5 131 71.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-49 199.1 134 71.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.7e-49 198.7 129 76.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.6e-49 198.4 135 70.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 4.7e-49 198.0 134 71.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.0e-49 197.2 125 76.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.0e-48 196.8 135 71.9
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-48 196.8 134 70.9
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-48 196.4 131 74.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.8e-48 196.1 132 71.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.3e-48 195.7 135 69.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.2e-48 194.5 134 68.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 8.8e-48 193.7 130 72.3
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 8.8e-48 193.7 128 69.5
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.8e-48 193.7 128 69.5
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 8.8e-48 193.7 126 73.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-47 193.4 123 73.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.2e-47 193.4 122 76.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.5e-47 193.0 123 74.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.5e-47 193.0 126 70.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.6e-47 192.2 130 72.3
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.6e-47 192.2 127 70.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-47 191.8 134 67.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-47 191.8 127 69.3
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.7e-47 191.0 129 69.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 7.5e-47 190.7 135 69.6
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.5e-47 190.7 134 67.9
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.3e-46 189.9 120 73.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.7e-46 189.5 125 72.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.7e-46 189.5 125 70.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.7e-46 189.5 135 68.9
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.7e-46 189.5 124 71.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.2e-46 189.1 123 71.5
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.2e-46 189.1 120 73.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.8e-46 188.7 129 68.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.8e-46 188.7 126 72.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.7e-46 188.3 129 66.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.7e-46 188.3 126 69.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.9e-46 188.0 126 72.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 4.9e-46 188.0 124 71.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 6.3e-46 187.6 126 69.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.3e-46 187.2 133 66.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.3e-46 187.2 126 71.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.1e-45 186.8 135 68.1
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-45 186.8 124 72.6
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.4e-45 186.4 132 68.9
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.4e-45 186.4 117 74.4
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.8e-45 186.0 126 68.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.8e-45 186.0 119 73.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.4e-45 185.7 135 68.1
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.1e-45 184.9 125 69.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 4.1e-45 184.9 120 70.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.1e-45 184.9 126 71.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 5.4e-45 184.5 130 74.6
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 7.0e-45 184.1 126 68.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 9.1e-45 183.7 128 65.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.2e-44 183.3 125 68.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-44 183.3 119 69.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.2e-44 183.3 129 66.7
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.0e-44 182.6 123 69.9
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 2.0e-44 182.6 120 71.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.5e-44 181.8 122 70.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.5e-44 181.4 129 66.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 7.7e-44 180.6 120 71.7
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.0e-43 180.3 127 63.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.0e-43 177.9 128 66.4
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.0e-43 177.9 128 64.1
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.6e-43 177.6 119 68.1
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.6e-43 177.2 120 70.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.6e-43 177.2 120 70.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 8.6e-43 177.2 134 64.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.5e-42 176.4 124 66.1
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.9e-42 176.0 119 68.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-42 176.0 120 70.0
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 128 63.3
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.2e-42 174.9 119 69.7
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.6e-42 174.5 133 60.2
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 9.5e-42 173.7 124 65.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 9.5e-42 173.7 119 65.5
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.5e-42 173.7 129 65.9
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 128 60.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-41 172.6 122 68.0
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.1e-41 172.6 129 62.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.8e-41 172.2 128 60.9
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 4.7e-41 171.4 120 65.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.7e-41 171.4 126 59.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.1e-41 171.0 125 64.8
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 6.1e-41 171.0 114 69.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 8.0e-41 170.6 126 65.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.4e-40 169.9 123 67.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 123 63.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.0e-39 166.0 120 63.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.6e-39 165.6 123 63.4
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.9e-38 161.4 125 60.0
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-37 159.5 131 63.4
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.2e-37 158.7 125 60.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.2e-37 158.7 128 59.4
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.2e-37 158.7 126 61.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.0e-37 157.5 123 60.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 7.0e-37 157.5 114 65.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.2e-37 157.1 116 65.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-36 156.8 126 60.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.6e-36 156.4 118 65.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.7e-36 155.6 107 68.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 4.6e-36 154.8 122 59.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.9e-36 154.5 97 74.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.8e-36 154.1 121 59.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-35 153.7 128 54.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-35 153.7 104 71.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-35 153.3 128 56.2
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.3e-35 153.3 120 60.8
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.3e-35 153.3 133 54.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 55.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 55.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 55.5
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.3e-35 152.5 124 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.0e-35 151.4 119 58.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.0e-35 151.4 131 58.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 5.0e-35 151.4 128 55.5
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 5.0e-35 151.4 118 57.6
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 6.6e-35 151.0 124 57.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.6e-35 150.6 130 59.2
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.1e-34 150.2 119 59.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-34 149.8 130 59.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-34 149.8 120 56.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.5e-34 149.8 120 56.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.9e-34 149.4 118 57.6
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.9e-34 149.4 128 57.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.5e-34 149.1 128 54.7
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 3.3e-34 148.7 126 58.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.3e-34 148.3 128 55.5
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.3e-34 148.3 128 55.5
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.6e-34 147.9 130 57.7
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.6e-34 147.9 110 62.7
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 7.3e-34 147.5 123 57.7
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.1e-33 146.0 124 56.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 8.0e-33 144.1 130 58.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.4e-32 143.3 101 67.3
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.2e-31 140.2 125 56.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.4e-31 138.7 116 55.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.7e-30 135.2 123 54.5
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.1e-29 131.7 119 52.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-26 123.6 120 49.2
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.4e-21 106.7 79 62.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-21 105.1 60 78.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-20 102.8 63 76.2
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.6e-20 101.7 63 76.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-19 100.1 64 71.9
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.7e-17 91.7 64 68.8
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.7e-17 91.7 64 68.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.2e-17 91.3 63 66.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.2e-17 91.3 57 71.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-16 90.1 53 77.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.0e-16 88.6 82 58.5
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.9e-15 84.0 53 73.6
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.7e-14 83.2 112 40.2
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.7e-14 82.0 59 64.4
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.2e-13 79.0 58 65.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.1e-13 78.6 122 36.1
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.4e-13 78.2 62 53.2
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 4.6e-12 75.1 84 46.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.4e-08 63.5 68 47.1
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 1.5e-07 60.1 36 77.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.4e-07 58.5 63 44.4


User provided reference genes

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