Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 2307.7 1198 100.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1934.5 1196 84.8
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1924.1 1184 84.1
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1880.5 1198 82.8
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1879.4 1197 82.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1873.6 1194 82.0
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1847.0 1169 83.5
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1835.5 1188 81.5
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1776.9 1217 78.8
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1776.9 1217 78.8
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1695.2 1210 74.9
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1691.4 1194 75.3
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1664.4 1206 74.2
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1565.8 1132 74.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1565.4 1229 69.5
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1550.4 1220 70.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1545.4 1203 69.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1527.3 1223 68.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1524.2 1223 68.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1518.1 1223 68.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1515.4 1220 68.4
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1505.3 1250 67.3
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1500.3 1212 67.8
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1495.3 1205 68.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1490.7 1205 68.2
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1482.2 1202 68.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1478.0 1172 68.5
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1476.5 1194 68.8
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1472.6 1202 68.0
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1470.7 1196 68.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1470.3 1162 68.4
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1464.1 1206 67.1
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1463.4 1209 67.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1158 68.6
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1459.9 1203 67.7
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1459.5 1158 68.7
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1200 66.1
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1453.3 1201 65.6
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1452.2 1201 66.0
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1450.6 1211 66.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1442.9 1212 65.3
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1441.4 1203 66.3
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1192 67.0
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1224 65.8
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1432.2 1211 64.6
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1431.8 1211 65.1
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1424.5 1217 65.6
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1423.7 1195 66.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1422.5 1217 64.6
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1208 65.2
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1420.2 1210 64.5
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1417.9 1196 66.1
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1217 64.3
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1407.5 1217 64.2
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1406.7 1217 64.1
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1405.6 1193 65.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1401.7 1205 65.0
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1398.3 1242 63.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1194 65.0
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1390.2 1193 64.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1388.6 1193 64.3
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1388.2 1196 64.8
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1388.2 1166 65.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1386.7 1195 64.7
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1380.5 1219 63.7
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1374.8 1237 62.7
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1374.8 1237 62.7
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1370.1 1158 65.4
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1369.4 1223 63.1
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1367.4 1237 62.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1367.4 1179 63.5
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1364.0 1159 65.1
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1363.2 1195 63.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1357.8 1205 62.8
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1355.5 1413 56.7
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1192 63.2
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1352.8 1191 63.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1344.7 1216 61.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1335.1 1210 62.5
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1323.1 1184 61.8
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1319.3 1215 60.3
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1311.6 1196 62.2
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1310.4 1338 58.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1308.5 1166 62.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1305.8 1158 63.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1295.8 1148 62.9
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1288.5 1159 62.3
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1285.8 1182 60.7
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1275.0 1152 63.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1265.8 1220 59.3
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1250.3 1209 60.0
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1250.3 1227 59.1
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1158.7 1036 62.1
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1154.4 1194 56.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1130.9 840 72.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1108.2 1171 56.8
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1099.3 1079 58.6
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1093.2 1141 54.9
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1088.9 1193 54.8
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 1.6e-311 1072.8 1081 56.3
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.2e-306 1055.4 747 74.0
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 4.2e-306 1055.0 969 61.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.3e-299 1033.5 1180 52.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 8.7e-288 994.2 1157 50.9
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.5e-287 992.6 1245 50.1
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 7.7e-268 927.9 1145 48.0
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.0e-260 903.3 751 66.6
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.6e-255 886.3 691 69.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 9.7e-247 857.8 950 51.9
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.0e-237 825.1 670 65.7
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.0e-232 811.2 1246 42.0
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 2.6e-223 780.0 1255 40.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.6e-218 762.3 638 63.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 6.8e-208 728.8 681 59.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.0e-203 713.4 694 58.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 3.0e-203 713.4 649 61.8
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 2.4e-200 703.7 601 65.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.0e-200 703.0 1168 40.9
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.2e-193 681.4 617 60.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.3e-179 634.8 1150 38.3
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.9e-174 617.1 595 59.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.7e-159 565.8 523 60.0
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.8e-145 520.8 464 63.6
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.7e-145 520.4 465 62.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.4e-136 491.9 432 63.9
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 7.2e-133 479.6 1508 28.8
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 3.1e-128 464.2 361 70.6
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 8.9e-115 419.5 371 63.9
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 4.0e-107 394.0 319 68.7
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 3.3e-93 347.8 422 48.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-89 335.5 333 57.7
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.6e-87 328.9 262 69.1
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 4.3e-85 320.9 457 46.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.2e-80 304.7 284 60.2
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.6e-79 300.8 384 50.3
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 3.4e-74 284.6 358 47.8
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 3.2e-72 278.1 225 61.3
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.0e-62 245.0 241 57.3
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.5e-58 231.1 212 61.3
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 3.0e-54 218.4 130 86.2
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.4e-51 208.8 180 59.4
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-46 190.7 210 52.4
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.3e-45 188.0 208 52.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-44 186.4 208 51.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.6e-44 186.0 170 60.0
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-44 185.7 204 52.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-36 157.1 134 58.2
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-35 154.5 130 59.2
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 2.0e-34 152.5 173 53.2
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 7.7e-34 150.6 130 58.5
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.7e-33 149.4 127 58.3
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-33 147.5 192 49.5
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-31 143.3 130 66.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 3.3e-29 135.2 106 58.5
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-27 129.0 108 61.1
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.5e-25 120.6 111 54.1
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.8e-20 105.5 64 81.2
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.8e-20 104.8 232 36.2
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.3e-19 101.3 69 69.6
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 8.5e-17 94.0 187 39.6
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.9e-16 92.8 62 80.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.2e-14 84.7 252 30.6
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.5e-13 83.2 74 62.2
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.0e-13 82.8 75 61.3
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.2e-12 79.3 64 68.8
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.4e-11 76.6 145 42.8
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 2.4e-11 75.9 121 36.4
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-08 67.0 72 51.4
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.2e-08 65.1 60 60.0
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-06 60.1 106 42.5


User provided reference genes

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