Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 0.0e+00 1525.0 748 100.0
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 0.0e+00 1200.3 749 78.1
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 0.0e+00 1186.0 704 80.3
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 0.0e+00 1179.9 747 76.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 0.0e+00 1176.4 749 76.6
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 0.0e+00 1172.9 727 77.7
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1171.0 750 77.1
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 0.0e+00 1159.4 711 78.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1149.0 748 75.7
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 0.0e+00 1135.9 747 74.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 0.0e+00 1084.7 743 71.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.7e-303 1045.0 728 70.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 6.0e-303 1043.9 707 70.2
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 6.2e-300 1033.9 707 69.9
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 8.1e-300 1033.5 700 70.1
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 8.4e-297 1023.5 703 68.4
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.4e-296 1022.7 701 68.9
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 4.6e-295 1017.7 726 68.2
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 4.3e-293 1011.1 730 66.6
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-290 1001.9 704 67.8
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.6e-290 1000.3 700 67.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.2e-289 998.8 700 67.3
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-287 993.0 700 67.6
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.0e-286 989.9 700 69.1
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.5e-285 985.3 739 64.3
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 4.3e-285 984.6 699 67.5
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.3e-284 983.0 702 65.5
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.4e-283 979.5 700 66.9
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.8e-283 979.2 702 66.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 9.9e-282 973.4 700 65.6
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 4.6e-279 964.5 753 61.6
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.0e-278 963.4 702 64.7
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.3e-278 963.0 710 65.1
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.8e-278 962.6 717 64.3
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.6e-276 956.1 761 60.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.5e-269 932.9 723 63.1
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 4.3e-269 931.4 702 63.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.7e-268 928.3 711 63.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 6.9e-267 924.1 691 65.3
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 5.9e-266 921.0 703 63.4
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.0e-265 920.2 698 65.2
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.4e-264 916.4 705 63.7
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.0e-262 910.2 721 61.6
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.3e-262 909.8 710 61.7
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 3.7e-260 901.7 722 61.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.2e-258 896.7 726 62.0
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.5e-258 894.8 723 60.6
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 4.5e-258 894.8 725 60.4
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 4.5e-258 894.8 719 61.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 7.7e-258 894.0 738 60.3
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.9e-257 892.1 720 60.8
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.8e-257 891.7 699 62.1
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 5.0e-257 891.3 703 62.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.4e-254 883.2 721 61.4
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.8e-254 882.9 576 70.7
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.2e-252 875.9 701 62.5
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.8e-252 875.5 703 60.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.1e-251 873.6 701 61.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.2e-250 870.2 703 60.3
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.2e-250 870.2 709 60.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.9e-250 867.8 728 60.6
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.2e-249 865.9 705 60.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 6.5e-249 864.4 704 60.4
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.9e-248 862.8 620 67.1
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.6e-247 859.8 728 60.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 4.7e-247 858.2 723 58.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.7e-244 849.7 702 59.3
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 8.2e-244 847.4 695 60.9
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 9.1e-243 844.0 704 60.5
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.2e-242 843.6 733 58.3
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.2e-242 843.6 720 58.6
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 3.2e-240 835.5 701 59.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 6.1e-239 831.2 666 61.7
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.3e-238 829.3 708 58.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.0e-238 828.9 736 57.9
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.3e-236 823.5 765 54.8
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.1e-235 817.4 698 58.2
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.5e-234 815.1 698 58.9
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 3.6e-223 778.9 678 56.2
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 8.0e-223 777.7 728 52.1
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.3e-222 776.2 699 56.2
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.6e-221 772.7 662 58.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 2.2e-220 769.6 711 52.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 6.3e-220 768.1 698 56.6
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.3e-220 768.1 737 52.6
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.0e-219 764.6 547 65.6
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 9.2e-219 764.2 645 59.2
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 8.0e-215 751.1 734 50.4
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.8e-214 750.0 694 53.9
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.8e-206 723.4 633 57.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 8.9e-206 721.1 689 53.8
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 8.3e-204 714.5 743 50.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.7e-193 680.2 736 46.7
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.1e-187 658.3 580 57.1
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 5.6e-184 648.7 738 47.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 4.7e-183 645.6 649 52.9
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.5e-178 629.4 706 50.0
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.0e-174 615.9 473 60.9
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.4e-172 608.6 524 61.6
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.2e-148 530.4 359 68.5
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.3e-144 516.5 431 58.7
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.0e-133 480.7 710 38.3
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 3.2e-131 473.4 691 39.9
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 9.1e-126 455.3 635 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 5.5e-123 446.0 741 37.1
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.6e-122 444.5 769 35.9
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.0e-121 441.8 697 38.0
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.3e-111 405.6 769 34.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.0e-108 398.7 808 32.9
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 4.7e-106 389.8 367 54.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.3e-99 365.9 347 54.2
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.6e-93 348.2 334 54.8
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.1e-82 311.2 285 56.5
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.1e-69 268.1 543 32.0
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 7.8e-69 266.2 189 64.0
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-63 247.3 176 67.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 5.6e-59 233.4 141 78.0
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.6e-58 231.9 167 64.7
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.5e-56 223.8 328 37.5
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.9e-55 220.3 137 74.5
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.8e-41 175.3 474 30.8
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.3e-33 147.1 127 51.2
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.7e-28 130.2 123 55.3
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.3e-23 115.9 84 61.9
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.7e-23 115.5 103 47.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.0e-16 92.0 456 23.5
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.4e-14 83.2 80 55.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.7e-13 81.6 75 54.7
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.6e-13 81.3 80 53.8
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.6e-08 65.1 96 40.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 4.5e-08 64.3 167 32.3
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 3.8e-07 61.2 60 56.7
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.2e-06 57.0 48 58.3
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 7.2e-06 57.0 47 55.3


User provided reference genes

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