Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 2.6e-37 158.3 84 100.0
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 4.4e-29 131.0 83 83.1
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 1.9e-27 125.6 82 79.3
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 1.6e-26 122.5 83 75.9
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 2.7e-26 121.7 82 76.8
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 7.8e-26 120.2 77 83.1
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 1.8e-22 109.0 82 74.4
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 3.1e-22 108.2 80 71.2
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 4.0e-22 107.8 80 71.2
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 6.8e-22 107.1 78 70.5
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 4.4e-21 104.4 72 72.2
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 9.9e-21 103.2 78 69.2
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 1.7e-20 102.4 80 66.2
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 2.2e-20 102.1 78 70.5
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 3.7e-20 101.3 81 61.7
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 1.1e-19 99.8 81 63.0
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 1.1e-19 99.8 80 67.5
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 2.4e-19 98.6 78 67.9
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 2.4e-19 98.6 74 71.6
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 3.2e-19 98.2 79 67.1
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 4.1e-19 97.8 81 61.7
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 5.4e-19 97.4 71 71.8
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 7.1e-19 97.1 79 68.4
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 9.2e-19 96.7 77 64.9
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 1.6e-18 95.9 77 64.9
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 2.7e-18 95.1 79 67.1
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.7e-18 95.1 83 63.9
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 2.7e-18 95.1 76 61.8
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 1.0e-17 93.2 77 62.3
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.3e-17 92.8 79 65.8
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.3e-17 92.8 79 65.8
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 2.3e-17 92.0 77 59.7
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 6.6e-17 90.5 73 58.9
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 8.6e-17 90.1 71 69.0
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.5e-16 88.6 72 63.9
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 4.3e-16 87.8 73 60.3
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 5.6e-16 87.4 80 60.0
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 7.3e-16 87.0 65 67.7
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 7.3e-16 87.0 65 67.7
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 7.3e-16 87.0 71 66.2
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 9.5e-16 86.7 74 66.2
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.2e-15 86.3 86 60.5
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 2.1e-15 85.5 82 54.9
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 2.1e-15 85.5 75 61.3
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 2.8e-15 85.1 75 66.7
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 3.6e-15 84.7 79 58.2
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 4.7e-15 84.3 76 63.2
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 4.7e-15 84.3 76 56.6
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 1.4e-14 82.8 52 76.9
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 1.8e-14 82.4 77 54.5
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 2.4e-14 82.0 82 56.1
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 3.1e-14 81.6 82 51.2
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 4.0e-14 81.3 80 61.2
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 4.0e-14 81.3 76 59.2
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 5.2e-14 80.9 76 59.2
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 8.9e-14 80.1 74 59.5
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 1.2e-13 79.7 82 54.9
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 2.0e-13 79.0 74 58.1
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.0e-13 79.0 76 60.5
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 3.4e-13 78.2 73 58.9
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 5.8e-13 77.4 76 56.6
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 2.9e-12 75.1 82 54.9
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 2.9e-12 75.1 53 75.5
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 1.4e-11 72.8 76 53.9
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 4.1e-11 71.2 71 54.9
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 4.1e-11 71.2 71 54.9
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 1.7e-09 65.9 65 60.0
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.3e-09 65.5 69 55.1
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 4.3e-08 61.2 50 62.0
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 2.1e-07 58.9 58 50.0
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 2.1e-07 58.9 44 65.9
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 2.4e-06 55.5 62 53.2


User provided reference genes

Program Settings