Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.2e-242 842.8 433 100.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 8.3e-156 554.3 434 69.4
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.3e-150 536.2 434 67.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.3e-148 527.7 437 65.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.3e-148 527.7 437 65.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.7e-146 522.7 433 65.8
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.5e-141 506.9 437 64.8
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.7e-140 503.4 437 64.5
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.2e-140 503.1 434 64.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.2e-135 485.0 411 62.8
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.8e-134 483.4 435 62.1
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 5.3e-134 481.9 435 62.5
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.4e-133 478.8 434 59.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.9e-131 473.4 433 59.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.5e-128 463.8 427 59.7
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.3e-128 462.6 435 60.7
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 9.6e-128 461.1 436 58.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-126 456.8 432 59.5
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-126 456.4 433 58.7
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.0e-125 453.4 434 57.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 9.9e-125 451.1 440 58.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.1e-120 437.6 435 58.9
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.4e-110 403.3 436 53.4
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.3e-108 397.5 435 52.2
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 6.5e-108 395.2 436 53.2
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.0e-105 386.3 432 51.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 7.7e-101 371.7 437 50.1
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.0e-100 371.3 432 49.5
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.4e-99 367.5 435 49.0
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.6e-98 362.8 448 49.1
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.3e-96 355.9 349 57.3
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.8e-95 353.2 443 47.6
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.8e-95 353.2 435 48.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.1e-94 349.7 434 48.2
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 6.9e-94 348.6 448 47.1
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.9e-93 345.5 439 47.6
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.7e-93 345.1 437 47.1
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.7e-92 344.0 449 47.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.2e-92 343.6 435 48.5
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.5e-92 342.0 429 47.8
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.1e-91 341.3 435 47.6
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.9e-91 340.5 437 48.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 3.2e-91 339.7 442 46.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.5e-91 339.0 437 48.1
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.0e-89 334.7 431 45.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.8e-89 334.0 429 47.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.8e-89 331.6 437 46.9
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.1e-88 331.3 437 46.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.4e-88 329.3 437 46.0
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 4.4e-88 329.3 440 46.1
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.8e-86 323.9 435 46.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.5e-85 319.7 360 50.8
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 8.5e-84 315.1 436 45.6
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 8.5e-84 315.1 442 45.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.2e-83 313.2 436 45.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.5e-83 312.4 434 44.2
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 7.2e-83 312.0 436 45.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-82 310.8 436 45.4
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.6e-82 309.7 448 42.2
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 4.7e-82 309.3 407 45.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 6.1e-82 308.9 445 43.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.0e-81 308.1 436 45.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.8e-81 307.4 456 43.6
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 6.7e-81 305.4 438 45.2
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 7.4e-80 302.0 436 43.6
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.7e-79 300.8 436 44.7
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.8e-79 299.3 392 46.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.2e-76 290.4 434 42.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 8.5e-76 288.5 449 39.9
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.7e-74 283.5 443 39.5
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.6e-74 283.1 434 41.9
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 8.0e-74 282.0 442 40.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.8e-73 280.8 435 40.9
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.8e-73 280.8 450 40.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.0e-72 277.3 460 39.1
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-71 274.6 338 48.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 9.1e-70 268.5 450 39.8
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 7.7e-69 265.4 448 39.5
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 7.7e-69 265.4 439 38.3
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.3e-68 264.6 433 42.7
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 5.0e-68 262.7 446 40.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.2e-66 258.1 434 39.6
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 3.6e-66 256.5 450 39.3
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.7e-66 256.1 337 47.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 6.1e-66 255.8 440 38.0
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.0e-65 255.0 481 37.8
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 4.0e-65 253.1 440 37.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.6e-64 250.4 437 40.7
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 7.5e-64 248.8 445 39.8
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.3e-63 248.1 441 36.7
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 2.2e-63 247.3 433 38.8
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.8e-62 244.2 411 42.3
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 5.4e-62 242.7 459 37.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 9.1e-62 241.9 384 40.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.3e-60 237.3 446 38.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 3.8e-60 236.5 462 37.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.0e-60 236.1 435 38.9
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.9e-59 234.2 441 39.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-59 233.8 367 41.7
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.0e-57 228.4 437 37.3
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 2.0e-56 224.2 444 36.5
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 4.4e-56 223.0 433 36.5
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 9.8e-56 221.9 440 35.5
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.9e-55 220.3 440 35.2
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 6.3e-55 219.2 439 35.8
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-54 218.0 436 35.3
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-54 218.0 438 35.4
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.4e-54 217.2 437 35.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.2e-54 216.9 437 35.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 7.0e-54 215.7 437 35.2
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-52 211.8 442 34.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.5e-51 208.0 435 34.3
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.9e-51 207.6 436 35.6
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.3e-51 206.5 433 33.9
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 5.8e-48 196.1 230 52.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-47 194.5 395 36.7
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-46 191.4 431 36.9
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.1e-46 189.9 421 35.9
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.4e-46 189.5 421 35.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 9.2e-46 188.7 440 33.9
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 6.0e-45 186.0 162 59.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.7e-44 184.5 429 34.5
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.0e-44 183.7 281 42.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 8.1e-42 175.6 281 40.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.6e-40 170.6 363 34.2
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.4e-38 164.1 434 31.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 3.2e-38 163.7 386 34.2
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 4.6e-37 159.8 313 38.0
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.9e-36 156.8 372 32.8
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.5e-35 154.1 118 68.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.6e-34 151.4 432 32.2
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 3.6e-34 150.2 456 31.6
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.5e-32 144.8 452 29.9
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 5.8e-32 142.9 438 30.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-30 137.9 170 48.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.8e-26 124.0 167 44.9
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-25 119.8 169 44.4
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 4.6e-21 106.7 151 42.4
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 6.0e-21 106.3 151 42.4
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-20 105.1 151 41.7
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.3e-20 105.1 151 41.7
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 6.6e-20 102.8 142 43.0
Glyma.05G088550 Glycine max HOM05D004053 ORTHO05D005065 5.6e-19 99.8 85 58.8
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 7.3e-19 99.4 192 33.3
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 8.1e-18 95.9 128 46.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.1e-17 94.0 85 60.0
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.8e-15 87.0 93 52.7
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 3.5e-13 80.5 86 45.3
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.6e-11 72.4 61 65.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 9.0e-09 65.9 269 28.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-08 65.5 63 52.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 5.8e-08 63.2 126 35.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-07 62.0 71 43.7
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.7e-07 61.6 70 45.7
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.7e-07 61.6 70 45.7
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.7e-07 61.6 52 57.7
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-06 58.5 64 50.0
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-06 58.5 64 50.0
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-06 58.5 64 50.0
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.4e-06 57.8 83 34.9


User provided reference genes

Program Settings