Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 0.0e+00 1119.8 563 100.0
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.4e-250 868.2 552 80.6
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 4.4e-250 867.8 565 77.7
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 5.8e-250 867.5 569 78.7
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.7e-249 865.9 568 79.2
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 8.6e-246 853.6 560 77.7
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.6e-244 848.2 561 77.0
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.2e-242 843.2 552 78.4
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 9.2e-240 833.6 567 73.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 9.2e-240 833.6 563 75.3
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 4.6e-239 831.2 567 76.2
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.9e-238 828.2 571 74.1
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.6e-238 827.4 571 73.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.8e-236 822.0 565 75.4
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 4.7e-236 821.2 573 72.8
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.1e-235 820.1 561 74.5
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.4e-235 819.7 488 83.2
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.9e-235 817.4 569 73.1
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 2.6e-234 815.5 550 76.4
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 3.4e-234 815.1 497 80.3
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.3e-233 813.1 571 73.4
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.2e-233 812.4 577 72.4
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.2e-233 812.4 567 73.7
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.9e-233 812.0 487 81.7
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.4e-233 810.4 544 75.4
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.4e-233 810.4 544 75.4
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 8.4e-233 810.4 571 73.6
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.1e-232 810.1 552 73.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 1.4e-232 809.7 565 73.8
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.4e-232 809.7 569 72.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 5.4e-232 807.7 484 82.0
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 7.1e-232 807.4 568 73.6
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.2e-231 806.6 570 72.5
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.0e-230 803.5 569 71.5
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.0e-230 803.5 567 73.0
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.3e-230 802.4 487 81.3
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.9e-230 801.6 488 81.8
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 8.7e-230 800.4 488 80.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.3e-228 796.6 561 72.7
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 2.1e-228 795.8 572 71.7
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 2.1e-228 795.8 493 80.7
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 2.0e-226 789.3 489 78.7
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 2.0e-226 789.3 494 79.6
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.4e-226 788.5 569 70.8
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 4.5e-226 788.1 561 72.2
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 7.6e-226 787.3 559 72.1
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 4.9e-225 784.6 486 79.0
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.4e-224 782.3 567 71.1
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 3.5e-223 778.5 568 69.7
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 6.0e-223 777.7 575 69.6
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 7.9e-223 777.3 575 69.0
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.5e-221 772.3 529 74.5
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 7.4e-221 770.8 488 77.0
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 9.6e-221 770.4 479 78.1
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.3e-220 770.0 479 78.3
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.6e-220 769.6 483 78.3
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.6e-220 769.6 561 69.5
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.6e-220 769.6 491 77.6
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 1.6e-220 769.6 479 79.1
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 2.8e-220 768.8 469 79.5
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 6.2e-220 767.7 483 78.1
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 8.1e-220 767.3 483 78.1
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 8.1e-220 767.3 484 78.3
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 8.1e-220 767.3 493 76.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.4e-219 766.5 560 70.7
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 2.4e-219 765.8 489 76.3
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 2.4e-219 765.8 492 77.0
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.1e-219 765.4 483 77.8
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 5.3e-219 764.6 578 70.2
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.0e-219 763.8 491 76.8
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 3.4e-218 761.9 479 78.3
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 9.9e-218 760.4 471 80.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 9.9e-218 760.4 482 77.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.2e-217 759.2 480 77.1
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.9e-216 756.1 479 76.8
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.5e-215 751.9 548 70.1
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.0e-215 751.1 548 69.9
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.0e-215 751.1 494 74.1
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 2.3e-214 749.2 438 84.0
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.5e-213 746.5 558 69.2
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.1e-212 742.7 548 69.5
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-211 739.6 521 72.7
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.4e-211 739.2 492 75.8
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.1e-211 738.8 458 78.6
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 2.6e-210 735.7 554 67.0
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 5.8e-210 734.6 479 74.3
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.7e-209 733.0 552 67.2
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.9e-208 729.6 477 74.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.9e-208 729.6 477 74.6
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.6e-207 726.5 570 65.8
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.6e-207 726.5 484 72.9
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.0e-206 723.8 437 81.0
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.8e-206 723.0 447 79.6
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.3e-206 722.6 479 73.3
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.0e-206 722.2 552 66.5
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 7.4e-205 717.6 410 85.6
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.0e-201 707.2 502 68.5
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 2.9e-201 705.7 471 72.0
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 6.3e-196 688.0 494 71.5
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.0e-190 669.1 488 69.9
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 3.3e-189 665.6 474 66.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.1e-187 657.5 484 66.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.0e-186 656.4 442 75.3
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.7e-185 653.3 475 66.7
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.8e-185 652.1 475 66.5
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.4e-184 650.2 477 70.6
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 3.6e-183 645.6 568 61.8
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.2e-178 630.6 464 65.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 7.7e-178 627.9 473 63.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 8.5e-177 624.4 475 63.6
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 8.5e-169 597.8 401 73.3
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 1.9e-168 596.7 481 62.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.8e-161 572.4 482 57.5
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 2.1e-159 566.6 475 56.0
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.7e-156 557.0 491 57.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 9.2e-155 551.2 474 57.0
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 8.3e-148 528.1 435 64.6
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.5e-144 516.5 372 72.3
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 2.6e-141 506.5 473 51.2
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 9.5e-136 488.0 318 76.7
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.8e-133 478.8 330 73.6
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 8.9e-126 454.9 487 48.5
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.1e-118 429.9 486 46.1
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 5.3e-78 296.2 276 57.6
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.8e-65 254.6 481 33.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 5.7e-56 223.0 133 81.2
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.0e-41 175.6 100 82.0
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 4.6e-37 160.2 426 25.6
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 2.6e-32 144.4 72 93.1
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 4.9e-23 113.6 80 73.8
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 3.4e-16 90.9 424 23.6
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 2.2e-15 88.2 49 85.7
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 6.0e-13 80.1 448 25.2
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 8.4e-07 59.7 28 96.4


User provided reference genes

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