Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 2.5e-223 778.5 391 100.0
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 5.3e-194 681.0 405 87.7
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 2.4e-178 629.0 405 80.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.1e-175 620.2 407 78.6
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.2e-174 616.7 407 77.4
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 8.0e-174 614.0 404 78.5
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.2e-173 611.3 405 78.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 9.8e-172 607.1 396 78.8
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 2.2e-171 605.9 402 75.9
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.2e-169 600.1 399 76.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.9e-168 595.5 401 76.6
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-166 589.7 346 84.7
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 2.8e-166 589.0 400 76.0
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-165 585.1 350 83.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-165 585.1 346 83.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.4e-162 575.9 406 73.2
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 5.4e-162 574.7 401 74.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 2.0e-161 572.8 405 73.3
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 3.5e-161 572.0 336 81.8
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-160 570.5 395 73.9
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.7e-160 569.7 335 83.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.9e-160 568.9 335 82.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.9e-160 568.9 393 73.8
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 6.6e-160 567.8 335 82.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.5e-159 565.8 389 74.6
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.3e-159 565.5 333 82.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 3.3e-159 565.5 389 74.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.3e-159 565.5 390 74.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.6e-158 563.1 384 73.2
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 2.8e-158 562.4 400 72.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 4.7e-158 561.6 376 73.9
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 4.7e-158 561.6 376 73.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 8.0e-158 560.8 340 80.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.8e-157 559.7 336 80.1
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 4.0e-157 558.5 342 80.4
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.2e-156 557.0 433 67.7
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.4e-156 555.4 416 69.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.4e-156 555.1 404 71.0
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 9.8e-156 553.9 395 71.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.3e-155 553.5 336 79.5
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.9e-155 552.4 342 79.5
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 6.4e-155 551.2 341 79.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 8.3e-155 550.8 340 78.2
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.4e-154 550.1 384 71.9
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.4e-154 550.1 355 77.2
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.9e-154 549.7 397 71.3
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.9e-154 549.7 399 70.2
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.4e-154 549.3 393 70.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.1e-154 548.5 336 78.9
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 5.4e-154 548.1 404 70.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 9.2e-154 547.4 396 68.9
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.6e-153 546.6 404 69.8
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.7e-153 545.8 406 69.5
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 3.5e-153 545.4 399 68.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 6.0e-153 544.7 332 78.3
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.3e-152 542.7 393 69.5
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.0e-152 542.3 382 73.6
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.0e-152 542.3 357 74.5
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 3.9e-152 542.0 411 67.6
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 6.6e-152 541.2 390 70.0
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.1e-151 540.4 406 68.5
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.9e-151 539.7 395 68.9
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.9e-151 539.7 339 77.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.9e-151 539.7 334 78.4
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 3.3e-151 538.9 336 76.8
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 3.3e-151 538.9 400 69.2
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.3e-151 538.5 409 67.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 5.6e-151 538.1 333 78.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 9.5e-151 537.3 393 70.5
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.2e-150 537.0 396 68.7
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 2.8e-150 535.8 370 72.7
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.8e-150 535.8 396 68.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.4e-149 533.5 335 76.1
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.4e-149 533.5 324 78.7
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-149 531.9 346 78.3
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.0e-148 529.6 414 67.1
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 4.4e-148 528.5 373 70.5
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.7e-147 526.6 423 63.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 2.2e-147 526.2 391 70.3
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 4.9e-147 525.0 296 85.1
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 8.3e-147 524.2 336 74.7
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.9e-146 523.1 336 75.3
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.2e-146 522.3 326 77.0
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 4.1e-146 521.9 334 73.7
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 5.4e-146 521.5 390 67.7
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 9.2e-146 520.8 368 70.7
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.6e-145 520.0 396 69.2
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.1e-145 519.6 362 72.4
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.7e-145 519.2 336 74.7
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 7.8e-145 517.7 336 74.7
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-145 517.7 336 74.4
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.0e-144 517.3 337 75.4
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.3e-144 516.9 336 74.7
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.0e-144 515.8 340 74.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 3.0e-144 515.8 335 74.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.9e-144 515.4 336 74.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 5.1e-144 515.0 336 74.1
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 6.6e-144 514.6 399 66.4
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-143 513.1 310 80.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 5.6e-143 511.5 342 73.4
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 5.6e-143 511.5 337 74.2
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.6e-142 510.0 340 73.5
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.6e-142 510.0 366 68.0
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.2e-141 505.0 394 68.0
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.2e-141 505.0 394 68.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.0e-140 503.1 395 66.3
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.4e-140 502.3 283 83.7
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.7e-139 500.0 394 67.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 8.4e-139 497.7 352 72.2
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-137 493.8 277 85.2
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.2e-137 493.8 336 72.6
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 2.7e-137 492.7 335 71.9
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 7.8e-137 491.1 354 68.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-132 477.2 345 68.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.4e-132 475.7 334 67.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 5.8e-132 474.9 336 69.9
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 9.9e-132 474.2 325 68.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 3.8e-131 472.2 299 75.6
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.1e-130 470.7 350 64.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.0e-128 464.2 330 68.5
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.3e-128 463.0 299 74.6
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.3e-128 463.0 299 74.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 5.8e-124 448.4 333 68.2
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 6.0e-121 438.3 334 62.3
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 5.1e-120 435.3 268 78.0
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.4e-117 427.2 431 57.1
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.7e-115 420.2 319 66.5
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.9e-111 406.8 307 66.1
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.7e-105 386.3 326 57.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.5e-103 380.6 261 71.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-101 374.4 272 71.7
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.1e-101 374.4 376 52.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.1e-98 364.4 293 59.7
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.1e-97 360.1 331 59.2
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-86 323.9 350 54.3
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.4e-82 310.8 188 77.1
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.8e-78 296.6 178 81.5
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.3e-75 287.7 182 76.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.0e-72 276.6 161 83.2
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.4e-71 272.7 158 84.8
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-70 271.2 287 53.0
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 4.8e-62 242.7 142 78.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-59 235.0 231 56.7
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.8e-55 218.4 219 58.0
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.2e-54 217.2 332 41.6
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.1e-50 204.9 116 85.3
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-50 201.8 285 46.3
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-49 200.7 130 77.7
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-44 184.9 131 74.0
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-41 173.7 131 71.8
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-41 173.7 131 71.8
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 8.0e-41 172.2 122 74.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-32 142.5 159 52.8
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-32 142.5 159 52.8
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 5.4e-29 132.9 231 38.1
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 4.6e-20 103.2 172 36.0
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.2e-16 89.7 53 73.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.2e-16 89.7 53 73.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-12 78.2 51 74.5
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 2.1e-09 67.8 43 79.1
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-09 67.8 38 86.8
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 4.0e-08 63.5 54 63.0
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 4.0e-08 63.5 54 63.0
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 7.6e-07 59.3 47 59.6


User provided reference genes

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