Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 0.0e+00 1343.6 725 100.0
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.4e-208 730.3 736 63.3
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 1.7e-201 706.8 739 61.7
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 1.7e-185 653.7 748 56.3
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.7e-185 653.7 778 56.3
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 1.9e-184 650.2 755 57.0
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 4.0e-179 632.5 741 55.9
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 1.2e-175 620.9 757 55.4
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 7.4e-173 611.7 768 53.4
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 6.2e-164 582.0 755 53.9
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 5.7e-157 558.9 804 50.2
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 4.8e-156 555.8 779 49.9
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.5e-154 550.8 743 49.9
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 2.8e-148 530.0 775 50.6
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 3.5e-138 496.5 704 48.7
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 3.6e-135 486.5 762 46.7
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 4.4e-133 479.6 646 51.1
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 3.5e-130 469.9 693 47.6
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 2.1e-127 460.7 734 45.9
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 5.7e-125 452.6 787 42.6
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 3.2e-120 436.8 793 42.9
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 9.4e-120 435.3 767 44.1
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 8.8e-118 428.7 776 42.7
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.2e-117 428.3 577 47.8
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.5e-117 427.9 737 44.1
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 4.4e-117 426.4 765 43.5
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 9.8e-117 425.2 781 42.5
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 4.1e-115 419.9 811 41.4
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 7.0e-115 419.1 750 44.0
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 9.1e-115 418.7 756 43.1
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 2.3e-113 414.1 705 41.8
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 7.2e-112 409.1 738 43.0
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 1.2e-111 408.3 774 42.8
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 2.6e-109 400.6 618 45.1
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 4.4e-109 399.8 634 46.5
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 9.8e-109 398.7 634 46.4
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.7e-106 390.6 642 42.7
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 2.7e-106 390.6 812 40.0
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 2.9e-105 387.1 676 42.8
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 5.6e-104 382.9 803 40.2
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.8e-103 380.6 766 40.9
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.8e-102 377.9 758 41.6
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 2.2e-100 370.9 752 41.4
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 6.4e-100 369.4 626 43.5
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 6.4e-100 369.4 752 41.1
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 8.3e-100 369.0 807 40.6
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 3.2e-99 367.1 814 38.3
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 4.1e-99 366.7 776 39.9
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.2e-98 365.2 670 42.1
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 1.6e-98 364.8 823 39.0
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.6e-98 364.8 681 41.0
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.6e-98 364.8 825 37.5
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 7.8e-98 362.5 820 38.5
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 1.0e-97 362.1 814 39.7
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.9e-96 357.8 625 42.1
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 6.8e-94 349.4 737 40.0
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 5.8e-93 346.3 644 41.9
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 7.5e-93 345.9 668 41.0
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 3.7e-92 343.6 586 43.9
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 1.4e-91 341.7 785 40.0
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 7.0e-91 339.3 768 39.2
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 3.5e-90 337.0 597 44.6
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 5.1e-89 333.2 652 39.7
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 1.5e-88 331.6 756 38.8
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 4.7e-87 326.6 643 40.4
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 6.8e-86 322.8 499 46.5
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.8e-85 319.7 800 38.0
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 7.5e-85 319.3 689 39.0
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.7e-84 318.2 638 39.3
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 2.9e-84 317.4 630 40.2
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 9.2e-83 312.4 666 40.2
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 1.3e-81 308.5 634 38.6
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 1.1e-80 305.4 617 39.9
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 1.9e-80 304.7 675 38.7
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 2.1e-74 284.6 684 37.1
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.3e-71 275.4 600 38.8
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.1e-71 274.6 550 39.5
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.1e-71 274.6 550 39.5
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.8e-70 271.6 708 37.3
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 4.2e-67 260.4 289 54.7
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 8.1e-63 246.1 566 37.6
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.2e-61 242.3 664 35.7
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.7e-60 238.4 756 33.2
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.1e-59 235.7 587 35.9
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 9.3e-59 232.6 595 35.6
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 3.0e-57 227.6 762 32.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.0e-57 227.6 474 35.9
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 4.3e-56 223.8 791 33.0
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 3.1e-54 217.6 761 33.6
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 4.0e-54 217.2 601 34.9
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 6.9e-54 216.5 599 35.4
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 6.9e-54 216.5 646 32.2
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.5e-53 215.3 656 34.8
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 1.0e-52 212.6 805 32.3
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 6.4e-52 209.9 629 35.0
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 6.4e-52 209.9 629 35.0
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 3.2e-51 207.6 820 31.5
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 1.6e-50 205.3 801 31.7
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 2.7e-50 204.5 672 34.1
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 5.7e-48 196.8 600 34.2
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 7.6e-45 186.4 448 35.9
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 3.8e-44 184.1 727 31.6
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 8.7e-41 172.9 757 29.1
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.6e-37 161.4 610 29.3
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 1.1e-35 156.0 539 34.0
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.2e-31 141.7 518 32.4
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.8e-30 138.7 602 29.9
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 1.8e-25 122.1 198 43.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 2.3e-25 121.7 391 35.0
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 4.8e-23 114.0 608 27.8
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.3e-20 105.9 579 28.8
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.3e-20 105.9 579 28.8
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 9.4e-19 99.8 151 44.4
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 7.2e-11 73.6 76 53.9


User provided reference genes

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