Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.2e-185 652.9 311 100.0
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.3e-134 483.4 303 77.6
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.1e-130 470.3 293 76.8
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 1.5e-130 469.9 302 77.5
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 9.6e-130 467.2 307 72.6
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 9.6e-130 467.2 309 75.1
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.3e-129 466.8 312 70.8
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.3e-129 466.8 317 71.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.6e-129 466.5 316 70.6
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 2.8e-129 465.7 297 75.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 6.2e-129 464.5 299 75.3
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 6.9e-128 461.1 310 71.6
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 4.5e-127 458.4 312 71.8
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 5.8e-127 458.0 301 76.1
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.7e-126 456.4 310 70.3
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.2e-126 456.1 314 70.7
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 2.9e-126 455.7 316 69.9
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 6.4e-126 454.5 316 69.9
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 8.4e-126 454.1 283 75.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.1e-125 453.8 298 74.5
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 1.2e-124 450.3 293 72.0
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 1.6e-124 449.9 290 74.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 2.1e-124 449.5 320 67.5
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.9e-124 447.6 312 69.6
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 1.3e-123 446.8 306 71.6
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 1.3e-123 446.8 311 70.7
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.3e-123 446.8 282 75.2
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 1.3e-123 446.8 310 69.7
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.9e-122 443.0 334 65.9
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 4.3e-122 441.8 286 73.1
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 9.6e-122 440.7 277 74.4
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.3e-121 440.3 285 73.3
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 4.8e-121 438.3 312 66.7
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 4.8e-121 438.3 289 70.2
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 6.2e-121 438.0 312 67.0
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 1.1e-120 437.2 295 71.5
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 5.3e-120 434.9 286 71.3
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 6.9e-120 434.5 304 70.7
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 9.0e-120 434.1 296 70.6
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.5e-119 433.3 299 70.2
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.5e-119 433.3 312 67.6
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.6e-119 432.6 281 72.6
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.3e-118 430.3 281 72.2
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 3.8e-118 428.7 292 70.5
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 4.9e-118 428.3 323 67.2
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 6.5e-118 427.9 296 67.9
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 8.4e-118 427.6 303 68.6
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 8.4e-118 427.6 308 67.5
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 1.1e-117 427.2 286 67.5
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.1e-117 427.2 311 67.2
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.4e-117 426.8 288 71.5
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.4e-117 426.8 303 69.3
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 4.2e-117 425.2 301 69.1
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 7.1e-117 424.5 311 68.2
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 7.1e-117 424.5 291 68.7
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 1.2e-116 423.7 296 67.2
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.0e-115 420.6 316 66.5
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.0e-115 420.6 315 65.7
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.3e-115 420.2 315 65.4
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 1.8e-115 419.9 314 65.6
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.3e-115 419.5 275 70.5
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.5e-114 416.8 290 70.0
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.5e-114 416.0 295 66.8
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 2.5e-114 416.0 315 66.7
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 3.3e-114 415.6 283 69.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 3.3e-114 415.6 289 68.5
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 4.3e-114 415.2 287 68.6
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 7.4e-114 414.5 309 64.4
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.3e-113 413.7 273 71.8
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 2.8e-113 412.5 284 69.7
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 4.8e-113 411.8 306 64.7
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 1.4e-112 410.2 339 59.0
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 5.3e-112 408.3 274 72.3
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.3e-110 403.7 297 66.0
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 6.5e-110 401.4 390 53.8
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 2.1e-108 396.4 301 63.1
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 3.6e-108 395.6 333 59.5
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 4.8e-105 385.2 285 66.0
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.4e-101 373.6 310 62.6
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 7.4e-98 361.3 243 74.5
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 9.7e-98 360.9 288 60.4
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.7e-94 350.1 249 67.9
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 6.5e-94 348.2 352 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 2.5e-93 346.3 300 55.0
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.2e-92 344.0 304 55.3
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 1.3e-89 334.0 291 57.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 8.0e-84 314.7 297 54.9
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 4.5e-79 298.9 176 78.4
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 8.5e-78 294.7 177 77.4
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 1.1e-77 294.3 165 81.2
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 9.4e-77 291.2 192 74.5
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 1.0e-75 287.7 167 79.6
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 3.0e-75 286.2 189 72.0
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.8e-73 279.6 180 73.9
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 2.6e-66 256.5 279 44.8
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.8e-65 253.1 271 52.0
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 5.9e-63 245.4 179 64.8
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 4.3e-61 239.2 286 42.3
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.2e-58 231.1 296 41.2
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 9.2e-56 221.5 146 74.0
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 2.3e-54 216.9 162 64.2
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 4.6e-47 192.6 126 69.8
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 3.0e-30 136.7 98 61.2
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 5.1e-30 136.0 324 30.6
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.1e-28 130.6 280 33.9
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 1.4e-27 127.9 331 27.8
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 5.3e-27 125.9 82 69.5
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 4.2e-24 116.3 60 83.3
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 6.0e-23 112.5 65 75.4
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 2.4e-19 100.5 134 40.3
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 9.0e-19 98.6 156 42.3
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 5.1e-14 82.8 235 26.0
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 1.5e-10 71.2 164 30.5
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-10 70.1 68 44.1
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 6.5e-09 65.9 364 23.6
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 2.1e-07 60.8 157 30.6


User provided reference genes

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