Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 9.6e-167 590.1 303 100.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.1e-151 540.0 303 90.1
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.9e-151 539.3 303 90.1
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 7.4e-151 537.3 303 89.8
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 9.6e-151 537.0 303 89.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 4.8e-150 534.6 303 89.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.1e-149 533.5 303 88.8
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.4e-149 532.3 303 87.8
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.1e-149 531.9 303 89.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 4.0e-149 531.6 303 87.1
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.5e-148 529.6 303 89.1
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.0e-148 529.3 303 86.8
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.4e-141 505.8 300 85.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 2.6e-140 502.3 303 84.2
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 83.3
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 7.6e-140 500.7 303 83.8
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.9e-138 496.1 300 82.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.9e-138 496.1 300 82.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.5e-138 495.7 300 83.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 5.5e-138 494.6 300 82.3
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.2e-138 494.2 300 82.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.3e-138 493.8 300 82.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 9.3e-138 493.8 316 79.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 82.8
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.1e-137 492.7 302 80.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 6.1e-137 491.1 300 82.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.1e-137 491.1 300 81.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 6.1e-137 491.1 300 82.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 82.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.3e-136 490.0 301 81.1
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.3e-136 490.0 303 80.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 2.3e-136 489.2 303 80.9
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.3e-136 489.2 303 81.8
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.0e-136 488.8 303 80.9
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.0e-136 488.8 303 81.5
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 80.9
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 1.5e-135 486.5 303 81.5
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.5e-135 486.5 301 81.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.9e-135 486.1 303 79.9
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 2.5e-135 485.7 303 80.5
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 9.7e-135 483.8 303 80.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.3e-134 483.4 303 80.5
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 2.8e-134 482.3 300 80.3
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.8e-134 481.5 298 81.2
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 8.2e-134 480.7 303 80.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.4e-133 479.9 301 79.7
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.4e-133 479.2 297 81.1
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.4e-133 479.2 303 79.5
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 9.1e-133 477.2 303 80.2
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.2e-132 476.9 303 80.5
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.2e-132 476.9 300 78.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.5e-132 476.5 301 80.1
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-132 476.5 298 80.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.5e-132 476.5 303 78.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.6e-132 475.7 300 77.7
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 79.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 4.5e-132 474.9 302 78.8
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.7e-132 474.2 303 78.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.0e-131 473.8 300 77.7
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.0e-131 473.8 303 79.2
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 77.7
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 2.2e-131 472.6 305 78.7
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.9e-131 472.2 301 79.1
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 3.8e-131 471.9 301 77.4
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 77.9
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 76.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.1e-130 470.3 302 77.2
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 3.2e-130 468.8 302 76.8
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 5.5e-130 468.0 301 76.7
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 7.2e-130 467.6 300 76.3
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 7.2e-130 467.6 301 79.1
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.4e-130 467.2 298 76.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.2e-129 466.8 303 75.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.6e-129 466.5 300 76.0
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 78.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 3.6e-129 465.3 300 77.3
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.6e-129 464.9 300 78.3
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.0e-128 463.8 302 77.8
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.0e-128 463.8 302 78.1
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.0e-128 463.8 302 78.1
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.8e-128 463.0 303 77.6
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.8e-128 463.0 301 75.7
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.3e-128 462.6 303 77.2
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.0e-128 462.2 300 76.7
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 77.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 6.7e-128 461.1 294 78.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.5e-127 459.9 301 75.7
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 77.6
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.3e-127 458.8 302 77.2
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 3.3e-127 458.8 300 77.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 76.6
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 76.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 4.8e-126 454.9 298 75.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-126 454.5 303 76.2
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 74.9
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-125 453.4 303 74.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.1e-125 452.2 321 71.7
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 72.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.3e-125 451.4 303 75.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.5e-124 449.9 303 75.2
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.5e-124 449.9 345 68.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.0e-124 449.5 303 75.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.0e-123 447.2 316 72.8
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.3e-123 446.8 298 74.8
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 1.7e-123 446.4 300 72.7
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.9e-123 445.7 303 73.9
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.9e-122 443.0 303 72.9
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.2e-121 440.3 303 73.9
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.7e-121 439.1 300 74.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.7e-121 438.3 301 73.8
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.0e-120 437.2 303 72.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.4e-120 436.8 309 73.1
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 5.7e-119 431.4 338 67.2
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.2e-118 429.5 249 83.9
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 4.5e-116 421.8 241 86.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.0e-112 410.6 259 77.6
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.5e-111 406.8 300 69.7
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 5.7e-111 404.8 298 65.8
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 4.8e-110 401.7 293 68.3
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.4e-109 400.2 293 67.9
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 5.3e-109 398.3 340 61.5
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 3.5e-108 395.6 312 67.6
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 5.0e-107 391.7 301 69.4
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 8.5e-107 391.0 288 67.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 4.4e-103 378.6 303 66.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 4.4e-103 378.6 209 89.5
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.9e-99 365.9 300 66.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 8.6e-99 364.4 295 61.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.1e-97 359.8 308 62.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.4e-95 352.4 209 81.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.3e-94 350.5 509 43.2
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 5.0e-91 338.6 290 56.2
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.2e-89 334.0 220 77.7
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.0e-88 328.9 200 82.0
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.0e-75 286.2 246 58.1
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.1e-74 284.3 245 63.7
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.5e-74 283.9 242 65.7
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 3.3e-74 282.7 298 49.7
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.2e-61 239.6 154 77.9
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.7e-52 209.9 285 41.4
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.5e-50 204.1 298 39.3
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.9e-46 189.1 148 61.5
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 7.9e-44 181.8 121 74.4
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 1.2e-36 157.9 101 75.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.5e-34 150.2 199 49.7
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.4e-32 144.4 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.0e-32 142.9 84 82.1
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 3.1e-24 116.7 234 29.1
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 5.0e-22 109.4 63 79.4
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 6.5e-22 109.0 70 75.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.5e-21 105.9 151 40.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.6e-20 104.4 83 67.5
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.8e-19 100.9 161 39.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-19 100.5 87 64.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.9e-18 97.4 86 62.8
Cfa027249 Carpinus fangiana HOM05D004556 ORTHO05D123038 1.8e-16 90.9 207 30.9
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 8.5e-14 82.0 121 45.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 7.7e-07 58.9 54 63.0
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 7.7e-07 58.9 63 55.6
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 5.0e-06 56.2 40 67.5


User provided reference genes

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