Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 8.5e-93 344.0 216 100.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.9e-44 183.3 222 60.8
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.1e-43 179.9 227 57.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.8e-42 176.8 217 58.1
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.0e-42 175.6 213 55.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 8.9e-42 174.5 215 54.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.0e-41 173.3 219 56.6
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.4e-41 172.6 224 51.3
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 9.9e-41 171.0 216 53.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.3e-40 170.6 224 54.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.7e-40 170.2 216 50.9
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.7e-40 170.2 218 50.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.7e-40 170.2 216 50.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.9e-40 169.5 213 46.9
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-40 169.5 214 49.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-40 169.5 214 49.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.8e-40 169.1 213 45.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.8e-40 169.1 213 47.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 4.9e-40 168.7 215 53.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.9e-40 168.7 216 50.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.4e-40 168.3 215 53.5
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.4e-39 167.2 217 50.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-39 167.2 224 53.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.9e-39 166.8 216 52.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.9e-39 166.8 214 45.8
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-39 166.4 226 48.2
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.2e-39 166.0 213 46.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.4e-39 165.2 214 51.9
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.4e-39 165.2 214 51.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.4e-39 165.2 222 55.4
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.3e-39 164.5 217 51.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-38 164.1 217 53.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.2e-38 164.1 220 50.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-38 164.1 214 51.9
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.2e-38 164.1 203 48.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-38 163.7 216 44.4
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.6e-38 163.7 217 46.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.1e-38 163.3 217 46.1
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.1e-38 163.3 214 46.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.1e-38 163.3 218 44.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.1e-38 163.3 218 45.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.7e-38 162.9 213 46.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.7e-38 162.9 217 50.2
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.5e-38 162.5 217 46.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 4.6e-38 162.2 216 53.2
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.6e-38 162.2 219 56.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.0e-38 161.8 215 47.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.0e-38 161.8 215 50.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.0e-38 161.8 215 48.4
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.0e-37 161.0 215 48.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.0e-37 161.0 213 46.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.0e-37 161.0 213 46.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.0e-37 161.0 216 43.5
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.0e-37 161.0 218 51.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-37 161.0 210 53.3
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.0e-37 161.0 218 44.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-37 160.6 214 50.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.7e-37 160.2 218 46.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-37 160.2 217 48.8
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.7e-37 160.2 217 48.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.7e-37 160.2 213 43.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 2.3e-37 159.8 222 50.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.3e-37 159.8 213 45.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.9e-37 159.1 219 46.1
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.9e-37 159.1 219 47.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.1e-37 158.7 224 57.1
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 8.7e-37 157.9 225 53.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.1e-36 157.5 214 46.7
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-36 157.5 214 46.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-36 157.1 213 50.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.5e-36 157.1 213 50.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.5e-36 157.1 227 50.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.5e-36 157.1 227 53.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.5e-36 157.1 196 55.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-36 156.8 215 51.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-36 156.4 213 47.4
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.5e-36 156.4 217 53.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.3e-36 156.0 224 46.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 4.3e-36 155.6 214 53.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 7.3e-36 154.8 227 48.5
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.3e-36 154.8 218 44.5
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-35 154.1 213 44.1
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.6e-35 153.7 223 48.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.1e-35 153.3 212 50.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.1e-35 153.3 214 48.6
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.8e-35 152.9 221 42.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.6e-35 152.5 200 43.0
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.8e-35 152.1 206 45.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 6.2e-35 151.8 217 43.3
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 8.1e-35 151.4 219 47.9
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.4e-34 149.8 215 42.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.4e-34 149.8 219 46.1
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.3e-34 148.7 208 49.5
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 5.3e-34 148.7 225 51.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.9e-34 148.3 214 46.7
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 6.9e-34 148.3 208 57.2
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 9.0e-34 147.9 224 43.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 9.0e-34 147.9 217 47.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-33 147.5 204 50.5
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-33 146.7 162 51.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-33 146.7 188 55.9
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.4e-33 146.0 226 48.2
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.4e-33 146.0 212 42.9
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.5e-33 145.6 210 47.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 9.9e-33 144.4 231 45.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.7e-32 143.7 215 48.8
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.2e-32 143.3 217 50.2
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 8.4e-32 141.4 231 42.4
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.4e-31 140.6 159 57.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.4e-31 140.6 154 54.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.9e-31 140.2 217 41.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.9e-31 140.2 214 39.7
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.4e-31 138.7 202 53.5
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-30 135.6 218 41.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 7.9e-30 134.8 213 46.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.8e-29 133.7 214 44.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.8e-27 126.3 229 44.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.8e-27 125.6 217 38.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.1e-27 124.8 143 44.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 5.3e-26 122.1 140 54.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.3e-26 122.1 124 50.0
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 6.9e-26 121.7 159 43.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.0e-25 120.2 216 38.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.8e-25 118.6 194 37.6
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-24 117.5 198 36.9
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.3e-24 117.5 212 36.8
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.9e-24 116.3 132 45.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.2e-23 112.5 146 42.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 6.0e-22 108.6 140 52.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-21 107.1 143 42.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.3e-21 106.7 225 34.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.1e-20 104.4 84 47.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.1e-20 104.4 151 36.4
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.3e-20 102.8 144 36.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 4.8e-19 99.0 82 54.9
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 8.1e-19 98.2 84 48.8
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.1e-19 98.2 86 46.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.4e-18 97.4 87 49.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 9.0e-18 94.7 109 46.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.4e-17 92.8 122 48.4
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.6e-17 91.7 84 52.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.7e-16 90.5 86 44.2
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.8e-16 89.4 114 50.0
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.9e-16 89.0 86 43.0
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.1e-15 87.8 104 44.2
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.7e-14 83.2 125 44.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.0e-13 81.3 125 44.0
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.0e-13 81.3 87 43.7
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-13 80.9 208 34.1
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.8e-10 70.5 101 40.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 3.1e-10 69.7 121 38.8
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.0e-08 64.7 108 42.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.2e-08 63.5 138 37.7
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 4.2e-07 59.3 97 40.2


User provided reference genes

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