Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.8e-123 445.3 224 100.0
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.8e-93 346.3 222 77.9
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 9.8e-92 340.5 226 75.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.3e-91 340.1 221 75.6
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 4.9e-91 338.2 226 74.3
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 4.1e-90 335.1 216 74.1
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.4e-90 334.7 221 76.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 5.4e-90 334.7 223 76.2
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.0e-89 332.8 215 77.2
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.7e-89 332.4 220 73.2
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.5e-89 331.6 217 74.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.5e-87 326.6 224 73.7
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.3e-87 325.5 217 72.8
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 7.3e-87 324.3 211 75.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.2e-86 323.6 224 73.2
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.2e-86 323.6 218 70.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.1e-86 322.8 216 74.1
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 4.7e-86 321.6 219 73.1
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.5e-84 316.6 219 72.6
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.6e-84 315.8 216 72.7
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 4.4e-84 315.1 220 69.5
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 5.7e-84 314.7 223 70.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 9.8e-84 313.9 222 71.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.1e-82 310.5 220 70.5
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.1e-82 310.5 220 70.5
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 3.2e-82 308.9 225 72.9
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 4.1e-82 308.5 216 73.1
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.2e-81 307.0 222 69.8
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.6e-81 306.6 221 69.7
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.6e-81 306.6 216 71.8
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.0e-81 306.2 218 72.0
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.7e-81 305.8 220 68.2
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.5e-81 305.4 217 69.6
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.5e-81 305.4 220 69.5
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.3e-80 303.5 218 70.6
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 2.3e-80 302.8 216 70.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.0e-80 301.6 222 69.4
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.1e-79 300.4 220 70.5
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 5.6e-79 298.1 216 69.0
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 9.5e-79 297.4 216 68.5
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.1e-78 296.2 213 69.5
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 2.8e-78 295.8 220 69.5
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 2.8e-78 295.8 217 70.5
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 6.2e-78 294.7 217 68.2
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.0e-77 293.9 216 66.7
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 6.8e-77 291.2 214 68.2
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.5e-76 290.0 219 65.3
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.3e-75 287.0 215 67.9
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 1.7e-75 286.6 221 66.1
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 3.7e-75 285.4 222 63.5
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.4e-75 284.6 204 70.1
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.1e-74 283.9 214 65.0
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-74 283.5 193 71.5
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.2e-74 282.3 223 67.3
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.4e-74 281.6 221 62.9
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.2e-73 280.4 218 63.8
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 4.6e-73 278.5 223 63.2
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 7.8e-73 277.7 218 65.1
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 7.8e-73 277.7 217 65.4
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 3.9e-72 275.4 217 65.0
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 3.9e-72 275.4 234 63.7
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.0e-72 275.0 216 65.3
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 6.6e-72 274.6 221 65.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 6.6e-72 274.6 218 63.8
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.1e-71 273.9 220 61.8
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.5e-71 273.5 227 65.6
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.5e-71 272.7 216 66.7
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 4.3e-71 271.9 214 64.5
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 7.3e-71 271.2 222 64.9
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 7.3e-71 271.2 215 65.1
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.2e-70 270.4 223 64.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.6e-70 270.0 224 64.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 2.1e-70 269.6 174 72.4
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 4.7e-70 268.5 228 60.1
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.7e-70 268.5 201 67.2
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.7e-70 268.5 201 67.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 8.1e-70 267.7 212 64.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 8.1e-70 267.7 325 47.1
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 4.0e-69 265.4 214 63.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 6.8e-69 264.6 214 62.1
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.2e-68 263.8 224 66.1
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.5e-68 263.5 216 62.5
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 2.0e-68 263.1 216 63.0
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.0e-68 263.1 201 65.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 2.0e-68 263.1 214 63.1
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.8e-68 261.5 186 67.7
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.3e-67 260.4 228 62.3
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.2e-67 259.6 224 63.4
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 8.3e-67 257.7 216 63.0
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.1e-66 255.4 221 63.8
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 4.1e-66 255.4 217 61.3
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.4e-66 255.0 208 63.9
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 7.1e-66 254.6 214 62.6
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.2e-65 253.8 224 60.3
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 2.7e-65 252.7 211 62.1
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.5e-65 252.3 224 59.8
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.0e-65 251.5 217 60.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.0e-64 250.8 222 57.2
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 3.0e-64 249.2 219 62.6
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.9e-64 248.8 217 59.9
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 5.1e-64 248.4 220 58.6
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 5.1e-64 248.4 211 61.1
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.1e-63 247.3 215 59.1
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.1e-63 247.3 210 61.4
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.5e-63 246.9 277 50.9
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 9.5e-63 244.2 213 61.5
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 9.5e-63 244.2 168 75.0
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.2e-62 243.8 176 68.2
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.6e-62 243.4 244 58.6
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.1e-62 243.0 203 63.1
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.5e-60 236.9 210 58.1
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 4.4e-60 235.3 214 59.3
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 9.9e-60 234.2 222 59.0
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.4e-58 229.6 172 69.2
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 4.1e-58 228.8 215 57.2
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 4.6e-57 225.3 169 69.2
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 7.8e-57 224.6 218 56.4
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 5.1e-56 221.9 131 81.7
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 5.1e-56 221.9 174 64.9
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 8.1e-54 214.5 173 64.2
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 5.2e-53 211.8 145 71.7
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.5e-52 210.3 209 54.1
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 4.4e-52 208.8 175 61.7
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 1.1e-50 204.1 199 52.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.2e-50 202.2 195 59.0
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 7.1e-50 201.4 211 53.1
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 7.8e-49 198.0 217 52.5
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.0e-48 197.6 370 38.1
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 8.7e-48 194.5 132 73.5
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 4.3e-47 192.2 161 60.9
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 4.3e-47 192.2 161 60.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 4.3e-47 192.2 161 60.9
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.4e-45 186.4 162 61.7
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 8.4e-43 177.9 173 53.8
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.6e-38 162.5 176 52.8
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.5e-34 148.7 194 52.1
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.6e-22 110.5 114 55.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 4.5e-20 102.4 189 39.2
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 8.5e-19 98.2 81 58.0
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.1e-18 97.8 170 41.8
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.1e-18 97.8 95 61.1
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.6e-17 94.0 219 36.5
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 3.6e-17 92.8 63 69.8
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.0e-16 89.7 59 69.5
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 5.1e-16 89.0 228 34.2
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 3.7e-14 82.8 229 31.0
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.5e-12 77.4 83 56.6
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 3.4e-12 76.3 81 53.1
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.3e-11 74.3 56 67.9
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 2.9e-11 73.2 163 33.1
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.9e-11 73.2 75 50.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.2e-10 69.7 105 44.8
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 9.4e-10 68.2 45 71.1
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 1.6e-09 67.4 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.7e-06 56.2 133 36.8


User provided reference genes

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