Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 5.0e-64 247.7 129 100.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.0e-37 158.7 123 68.3
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 1.5e-36 156.4 121 67.8
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.1e-34 150.2 128 65.6
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.1e-34 148.3 127 63.0
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 7.0e-34 147.5 127 64.6
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 9.5e-31 137.1 124 60.5
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 2.7e-17 92.4 124 42.7
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 2.3e-16 89.4 126 43.7
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 2.5e-15 85.9 126 40.5
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.7e-14 81.6 124 41.9
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 8.0e-14 80.9 124 41.9
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.1e-13 80.5 124 41.1
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 1.8e-13 79.7 132 39.4
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.8e-13 79.7 126 38.1
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 3.1e-13 79.0 125 40.0
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 6.8e-13 77.8 122 36.9
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.4e-12 75.5 124 36.3
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 5.8e-12 74.7 121 38.8
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 2.2e-11 72.8 119 37.0
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 4.9e-11 71.6 128 36.7
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 1.1e-10 70.5 120 36.7
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 1.1e-10 70.5 121 36.4
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 1.9e-10 69.7 109 44.0
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 1.9e-10 69.7 123 38.2
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 4.1e-10 68.6 126 34.9
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 4.1e-10 68.6 124 37.1
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.1e-10 68.6 121 38.0
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 7.0e-10 67.8 122 34.4
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 7.0e-10 67.8 122 38.5
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 9.2e-10 67.4 124 35.5
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 9.2e-10 67.4 121 36.4
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 1.6e-09 66.6 122 38.5
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.7e-09 65.9 119 36.1
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 3.5e-09 65.5 124 36.3
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.8e-09 64.3 115 31.3
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 7.8e-09 64.3 126 33.3
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 7.8e-09 64.3 127 34.6
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.0e-08 63.9 122 35.2
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.3e-08 63.5 127 33.1
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.3e-08 63.5 117 31.6
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.7e-08 63.2 120 35.8
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 1.7e-08 63.2 117 30.8
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 1.7e-08 63.2 117 31.6
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.3e-08 62.8 124 35.5
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 2.3e-08 62.8 117 30.8
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 3.0e-08 62.4 120 31.7
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.9e-08 62.0 119 33.6
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 5.0e-08 61.6 119 35.3
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 8.6e-08 60.8 121 38.0
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.1e-07 60.5 119 32.8
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.5e-07 60.1 135 34.8
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 1.9e-07 59.7 108 39.8
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 4.3e-07 58.5 126 31.7
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 4.3e-07 58.5 123 30.9
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 4.3e-07 58.5 118 32.2
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.3e-07 58.5 119 32.8
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.3e-07 58.5 119 32.8
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 7.3e-07 57.8 126 31.7
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 7.3e-07 57.8 128 32.0
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.3e-07 57.8 127 31.5
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 9.5e-07 57.4 124 29.0
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 9.5e-07 57.4 104 35.6
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.2e-06 57.0 121 32.2
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 1.2e-06 57.0 124 33.1
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.6e-06 56.6 118 33.1
Psat7g092800 Pisum sativum HOM05D018548 ORTHO05D020752 1.6e-06 56.6 108 38.0
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.1e-06 56.2 126 31.0
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.1e-06 56.2 126 31.0
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 2.1e-06 56.2 122 34.4
BcaB08g34968 Brassica carinata HOM05D007714 ORTHO05D009659 2.1e-06 56.2 114 30.7
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 2.1e-06 56.2 126 30.2
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 2.1e-06 56.2 123 30.1
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.1e-06 56.2 107 36.4
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 2.1e-06 56.2 116 34.5
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 2.8e-06 55.8 126 30.2
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 2.8e-06 55.8 126 30.2
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 3.6e-06 55.5 116 32.8
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.6e-06 55.5 122 32.0
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 4.7e-06 55.1 108 37.0
Aa31LG7G15510 Aethionema arabicum HOM05D007714 ORTHO05D009659 6.2e-06 54.7 114 30.7
Glyma.08G079700 Glycine max HOM05D018548 ORTHO05D020752 6.2e-06 54.7 112 39.3
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 6.2e-06 54.7 120 32.5


User provided reference genes

Program Settings