Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 4.3e-98 361.3 182 100.0
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 5.2e-59 231.5 186 63.4
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.2e-55 220.3 168 61.9
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 5.9e-55 218.0 204 56.9
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.7e-54 216.5 190 58.4
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.7e-54 216.5 190 58.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 2.1e-52 209.5 149 68.5
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 6.2e-52 208.0 203 53.2
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 4.0e-51 205.3 193 52.3
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 4.0e-51 205.3 162 58.0
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.5e-50 203.4 188 52.7
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.4e-50 202.2 188 53.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.4e-50 202.2 188 53.7
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 3.4e-50 202.2 184 58.7
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 4.4e-50 201.8 170 55.3
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.8e-50 201.4 190 52.6
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.9e-49 198.4 162 55.6
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 8.3e-49 197.6 165 56.4
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.9e-48 196.4 169 50.9
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.9e-48 196.4 188 52.1
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.9e-48 196.4 160 56.9
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.4e-48 196.1 185 50.8
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.4e-48 196.1 174 52.9
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.4e-48 196.1 167 53.9
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 4.1e-48 195.3 162 56.8
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 7.0e-48 194.5 158 54.4
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 7.0e-48 194.5 163 54.0
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.2e-47 193.7 162 54.9
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 2.0e-47 193.0 163 53.4
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 3.5e-47 192.2 167 52.7
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.0e-46 189.1 167 52.1
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 5.0e-46 188.3 189 49.7
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 5.0e-46 188.3 167 51.5
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 5.0e-46 188.3 197 48.2
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.1e-45 187.2 193 51.3
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 3.3e-45 185.7 177 49.2
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 4.3e-45 185.3 150 55.3
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 7.3e-45 184.5 163 54.0
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 9.5e-45 184.1 176 51.1
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-44 183.7 176 50.6
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.2e-44 183.7 176 50.6
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.2e-44 183.7 195 46.7
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.6e-44 183.3 177 49.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.6e-44 183.3 190 47.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.4e-43 180.3 155 52.9
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.4e-43 180.3 189 50.8
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 1.4e-43 180.3 160 47.5
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.8e-43 179.9 179 47.5
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.0e-42 176.4 135 60.0
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 7.5e-42 174.5 188 45.2
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 9.8e-42 174.1 159 51.6
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 9.8e-42 174.1 178 48.9
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.7e-41 173.3 195 49.2
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.7e-41 173.3 195 49.2
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 2.2e-41 172.9 188 49.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 2.2e-41 172.9 192 43.8
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 2.9e-41 172.6 193 45.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 6.4e-41 171.4 152 50.0
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.4e-40 169.5 155 49.7
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 7.1e-40 167.9 165 49.7
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 7.1e-40 167.9 162 49.4
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.6e-39 166.8 161 49.1
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.5e-39 165.6 140 52.9
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 6.0e-39 164.9 159 48.4
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 7.8e-39 164.5 193 46.1
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.0e-38 164.1 162 46.9
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.3e-38 163.7 179 45.8
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.3e-38 162.9 167 47.3
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 3.9e-38 162.2 173 46.8
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 8.6e-38 161.0 173 46.8
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.5e-37 160.2 186 44.6
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.3e-37 159.1 160 47.5
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 5.6e-37 158.3 157 46.5
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 7.3e-37 157.9 156 43.6
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 9.5e-37 157.5 172 44.8
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 9.5e-37 157.5 166 46.4
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 2.8e-36 156.0 187 45.5
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 4.7e-36 155.2 183 44.3
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 4.7e-36 155.2 140 49.3
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 6.2e-36 154.8 163 46.0
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 8.1e-36 154.5 178 45.5
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-35 154.1 172 45.3
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.1e-35 154.1 172 45.3
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.8e-35 153.3 172 46.5
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-35 153.3 185 41.1
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-35 153.3 185 41.1
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 3.1e-35 152.5 159 46.5
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 8.9e-35 151.0 178 43.8
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.2e-34 150.6 178 43.8
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 3.4e-34 149.1 178 42.7
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 4.4e-34 148.7 164 42.1
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.3e-33 147.1 164 43.3
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.3e-33 147.1 154 44.2
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 1.7e-33 146.7 146 45.9
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.2e-33 146.4 170 42.9
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.2e-33 146.4 170 42.9
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 2.2e-33 146.4 164 43.3
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 2.2e-33 146.4 193 39.9
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 3.8e-33 145.6 163 42.3
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.9e-33 145.2 176 40.3
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 8.4e-33 144.4 151 45.7
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.9e-32 143.3 180 42.2
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 9.2e-32 141.0 101 58.4
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 2.1e-31 139.8 178 42.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 2.7e-31 139.4 178 42.1
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 4.6e-31 138.7 167 42.5
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-30 136.3 178 43.3
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 2.3e-30 136.3 164 42.1
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 2.3e-30 136.3 167 41.9
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 2.3e-30 136.3 163 42.9
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 6.6e-30 134.8 172 37.8
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.1e-29 134.0 192 39.6
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.5e-29 133.7 163 42.3
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.9e-29 133.3 158 39.2
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.9e-29 133.3 183 37.2
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 7.3e-29 131.3 166 41.0
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 9.6e-29 131.0 166 40.4
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.1e-28 129.8 171 39.2
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.6e-28 129.0 181 38.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 4.7e-28 128.6 166 41.6
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 6.2e-28 128.3 182 36.8
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 6.2e-28 128.3 150 39.3
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 8.1e-28 127.9 181 38.7
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.1e-27 127.5 178 41.0
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.4e-27 127.1 155 40.0
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.4e-27 127.1 162 38.9
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.4e-27 127.1 183 37.2
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 3.1e-27 125.9 178 40.4
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 4.0e-27 125.6 154 42.9
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 5.2e-27 125.2 140 45.0
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 6.9e-27 124.8 156 40.4
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.2e-26 124.0 172 40.7
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.6e-26 122.9 128 43.8
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.6e-26 122.9 161 37.3
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 9.9e-26 120.9 127 43.3
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.8e-25 119.0 159 37.1
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 1.1e-24 117.5 159 37.1
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.1e-24 114.8 154 40.9
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.6e-23 113.6 145 36.6
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.3e-22 109.8 172 36.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 9.6e-21 104.4 179 38.5
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.4e-19 100.5 163 39.9
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 4.0e-19 99.0 169 30.8
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.0e-18 96.7 167 33.5
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 9.9e-18 94.4 118 40.7
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 6.4e-17 91.7 102 45.1
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.1e-16 90.9 150 38.0
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.9e-16 90.1 174 32.2
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 9.3e-16 87.8 160 32.5
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.8e-14 83.6 160 33.8
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.9e-14 82.4 190 28.9
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 5.1e-14 82.0 161 36.6
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.7e-14 81.6 121 33.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 7.4e-13 78.2 190 27.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 9.6e-13 77.8 166 33.1
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.8e-12 76.3 117 29.9
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.4e-11 73.9 95 41.1
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.4e-11 73.2 113 31.9
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.1e-11 72.8 143 29.4
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 5.3e-11 72.0 105 33.3
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 2.0e-10 70.1 126 34.1
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.2e-09 66.6 161 31.7
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 6.4e-09 65.1 148 27.7
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 8.4e-09 64.7 152 30.3
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.4e-08 63.2 118 30.5
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 3.2e-08 62.8 159 30.2
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 3.2e-08 62.8 159 30.2
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 7.1e-08 61.6 124 33.1


User provided reference genes

Program Settings