Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 2128.2 1054 100.0
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1798.5 1055 83.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1788.1 1056 82.8
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1762.7 1055 82.0
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1752.6 1050 82.1
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1749.6 1049 81.4
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1747.3 1049 82.0
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1727.6 1055 80.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1727.2 1051 80.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1726.8 1048 80.5
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1706.0 1054 79.3
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1705.3 1048 80.5
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1492.6 1046 69.6
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1485.7 1044 69.0
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1481.1 1049 68.2
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1461.0 1041 69.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1455.7 1045 67.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1454.1 1043 66.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1451.0 1048 66.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1449.1 1066 67.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1442.9 1023 67.8
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1428.7 1053 65.9
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1427.2 1048 66.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1425.6 1051 66.5
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1425.2 1059 65.7
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1418.3 1041 65.6
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1044 65.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1415.2 1079 65.8
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1412.9 1045 65.5
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1407.9 1050 66.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1405.2 1043 65.4
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1403.7 1055 64.9
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1047 64.2
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1051 64.7
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1384.4 1051 64.7
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1378.2 1050 64.8
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1377.5 1048 63.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1376.3 1048 63.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1375.5 1058 64.2
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1373.6 1056 63.7
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1372.5 1050 64.3
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1367.4 1046 64.3
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1366.3 1045 62.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1047 63.4
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1363.2 1061 63.8
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1357.0 1068 61.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1357.0 1051 62.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1351.3 1043 63.5
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1350.9 1045 62.1
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1349.3 1064 63.2
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1349.0 1066 62.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1348.2 1159 59.2
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1343.2 1050 61.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1049 62.2
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1335.1 1049 62.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1333.2 1049 62.2
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1332.4 1041 62.4
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1079 61.6
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1317.0 1059 61.1
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1308.5 1089 60.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1048 60.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1301.2 1059 60.5
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1012 62.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1066 60.1
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1280.4 1051 60.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1080 59.4
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1092 59.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1081 58.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1050 59.5
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1274.2 1053 59.0
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1273.1 1048 61.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1270.0 1045 59.0
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1266.5 1059 59.1
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1262.7 1099 57.8
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1238.0 1136 55.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1230.3 1048 58.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1220.3 1046 58.1
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1217.6 1046 57.9
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1215.3 1044 58.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1206.8 1046 57.3
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1190.3 1029 57.0
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 0.0e+00 1185.2 680 85.0
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1184.9 1050 56.1
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1168.7 854 66.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1161.7 1049 56.4
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1161.0 1171 52.9
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1157.1 1045 56.3
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1155.2 1064 55.7
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1124.0 1140 52.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1117.8 1050 52.8
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1101.7 1034 53.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.9e-299 1032.7 867 58.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.4e-297 1025.8 1046 52.3
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 7.7e-288 994.2 1016 49.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.0e-279 967.2 896 55.6
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.0e-271 940.6 889 56.4
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.7e-255 886.7 1062 46.4
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.9e-238 830.1 1055 43.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 9.2e-217 758.1 762 50.8
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.8e-212 743.8 704 53.1
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.4e-212 743.4 720 54.3
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.0e-211 740.3 701 52.6
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 3.7e-197 693.0 836 44.5
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 4.0e-196 689.5 541 64.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.1e-193 681.4 818 46.0
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.7e-191 672.2 508 63.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.6e-187 660.2 672 50.9
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.2e-186 657.1 1071 37.0
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.8e-186 656.4 501 62.1
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.4e-180 637.9 1051 37.9
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-174 617.5 525 58.9
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 7.4e-174 615.5 862 39.9
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.2e-173 614.0 597 53.9
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.1e-164 583.2 512 55.9
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.3e-157 559.3 438 63.7
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-156 558.1 340 81.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.8e-146 523.5 378 67.5
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.1e-119 434.1 356 60.1
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 4.1e-116 423.7 858 33.7
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.0e-114 419.1 450 46.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-101 375.6 346 57.5
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 9.9e-94 349.4 288 63.9
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.7e-91 341.3 1068 27.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.1e-90 337.0 502 42.4
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 8.7e-82 309.7 365 49.3
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-72 278.1 417 41.7
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-71 276.2 258 54.3
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.7e-69 268.9 211 62.6
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.4e-68 265.8 166 75.9
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 5.7e-65 253.8 177 69.5
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 4.8e-64 250.8 908 26.3
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 3.4e-62 244.6 223 52.9
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.2e-59 236.1 206 54.9
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-59 234.2 268 47.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.5e-52 211.8 318 41.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.1e-51 207.2 1156 24.3
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 2.3e-42 178.7 207 46.4
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 3.3e-41 174.9 156 61.5
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-39 169.9 330 33.6
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.8e-39 169.1 154 59.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 7.0e-39 167.2 124 66.9
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 4.2e-36 157.9 87 88.5
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.6e-33 148.7 113 65.5
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.7e-32 146.0 190 42.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.6e-27 129.4 114 58.8
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.6e-27 129.4 106 60.4
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.7e-27 127.9 99 61.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 6.1e-27 127.5 71 83.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 6.8e-26 124.0 70 87.1
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-23 116.3 164 37.2
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 3.5e-22 111.7 70 74.3
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 3.8e-21 108.2 99 55.6
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.0e-17 95.9 87 48.3
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.3e-13 83.2 56 73.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 9.5e-12 77.0 104 39.4
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 3.1e-10 72.0 75 57.3
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 9.8e-09 67.0 77 48.1
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 6.0e-06 57.8 42 66.7


User provided reference genes

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