Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005818 Lotus japonicus HOM05D008433 ORTHO05D009918 1.6e-64 249.2 120 100.0
Phvul.009G257200 Phaseolus vulgaris HOM05D008433 ORTHO05D009918 1.2e-19 100.1 147 44.9
TPR.G22611 Trifolium pratense HOM05D008433 ORTHO05D009918 1.3e-18 96.7 162 44.4
VMungo1309G0842 Vigna mungo HOM05D008433 ORTHO05D009918 8.5e-18 94.0 144 45.1
Glyma.19G259100 Glycine max HOM05D008433 ORTHO05D009918 8.0e-16 87.4 148 43.9
arahy.Tifrunner.gnm1.ann1.TN0QSJ Arachis hypogaea HOM05D032367 ORTHO05D009918 3.7e-13 78.6 115 43.5
CiPaw.01G081400 Carya illinoinensis HOM05D008433 ORTHO05D009918 3.7e-13 78.6 108 41.7
Psat3g000840 Pisum sativum HOM05D008433 ORTHO05D009918 4.8e-13 78.2 150 42.7
arahy.Tifrunner.gnm1.ann1.2VFH9L Arachis hypogaea HOM05D032367 ORTHO05D009918 1.1e-12 77.0 115 42.6
Cfa004661 Carpinus fangiana HOM05D008433 ORTHO05D009918 1.4e-12 76.6 105 43.8
Gohir.A11G100200 Gossypium hirsutum HOM05D008433 ORTHO05D009918 7.0e-12 74.3 126 42.1
Oeu046652.1 Olea europaea HOM05D008433 ORTHO05D009918 7.0e-12 74.3 110 42.7
Lalb_Chr18g0044671 Lupinus albus HOM05D008433 ORTHO05D009918 9.1e-12 73.9 143 37.1
Thecc.01G334700 Theobroma cacao HOM05D008433 ORTHO05D009918 9.1e-12 73.9 108 43.5
Gohir.D11G104900 Gossypium hirsutum HOM05D008433 ORTHO05D009918 1.2e-11 73.6 126 41.3
Gorai.007G112200 Gossypium raimondii HOM05D008433 ORTHO05D009918 1.2e-11 73.6 126 41.3
Manes.05G017500 Manihot esculenta HOM05D008433 ORTHO05D009918 7.7e-11 70.9 106 42.5
FAN03G0231 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.3e-10 70.1 83 49.4
FAN06G2608 Fragaria x ananassa HOM05D013717 ORTHO05D009918 2.9e-10 68.9 86 52.3
Thhalv10001667m.g Eutrema salsugineum HOM05D008433 ORTHO05D009918 3.8e-10 68.6 97 45.4
Potri.002G178100 Populus trichocarpa HOM05D008433 ORTHO05D009918 3.8e-10 68.6 90 43.3
Duzib138G0947 Durio zibethinus HOM05D008433 ORTHO05D009918 5.0e-10 68.2 84 50.0
FAN01G0488 Fragaria x ananassa HOM05D013717 ORTHO05D009918 6.6e-10 67.8 86 52.3
TWI14G1180 Tripterygium wilfordii HOM05D008433 ORTHO05D009918 6.6e-10 67.8 93 41.9
CANSAT56G3323 Cannabis sativa HOM05D013717 ORTHO05D009918 1.1e-09 67.0 87 48.3
FAN10G3359 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.1e-09 67.0 86 51.2
Actinidia28092 Actinidia chinensis HOM05D013717 ORTHO05D009918 1.9e-09 66.2 78 46.2
AUR62004552 Chenopodium quinoa HOM05D008433 ORTHO05D009918 1.9e-09 66.2 87 41.4
Ciclev10023317m.g Citrus clementina HOM05D008433 ORTHO05D009918 1.9e-09 66.2 79 45.6
AT2G46735 Arabidopsis thaliana HOM05D008433 ORTHO05D009918 3.3e-09 65.5 84 47.6
FAN10G3789 Fragaria x ananassa HOM05D013717 ORTHO05D009918 3.3e-09 65.5 83 49.4
Rhsim01G0179000 Rhododendron simsii HOM05D008433 ORTHO05D009918 3.3e-09 65.5 80 46.2
Sabra02G0135500 Salix brachista HOM05D008433 ORTHO05D009918 3.3e-09 65.5 98 40.8
Migut.B01918 Erythranthe guttata HOM05D013717 ORTHO05D009918 5.5e-09 64.7 92 44.6
Medtr7g118130 Medicago truncatula HOM05D008433 ORTHO05D009918 5.5e-09 64.7 126 36.5
AL4G46200 Arabidopsis lyrata HOM05D008433 ORTHO05D009918 7.2e-09 64.3 84 47.6
Carub.0004s2944 Capsella rubella HOM05D008433 ORTHO05D009918 9.5e-09 63.9 82 48.8
Ca_09539_v3 Cicer arietinum L. HOM05D032367 ORTHO05D009918 9.5e-09 63.9 66 54.5
Nn1g00412 Nelumbo nucifera HOM05D033573 ORTHO05D009918 9.5e-09 63.9 83 41.0
Aa31LG1G28120 Aethionema arabicum HOM05D008433 ORTHO05D009918 2.1e-08 62.8 78 51.3
CANSAT56G2967 Cannabis sativa HOM05D013717 ORTHO05D009918 2.1e-08 62.8 86 45.3
Oeu015062.1 Olea europaea HOM05D008433 ORTHO05D009918 2.1e-08 62.8 82 40.2
AUR62022666 Chenopodium quinoa HOM05D008433 ORTHO05D009918 2.8e-08 62.4 86 41.9
BcaB06g29468 Brassica carinata HOM05D008433 ORTHO05D009918 3.6e-08 62.0 80 47.5
BcaC02g07009 Brassica carinata HOM05D008433 ORTHO05D009918 3.6e-08 62.0 80 47.5
CARHR142080 Cardamine hirsuta HOM05D008433 ORTHO05D009918 3.6e-08 62.0 84 47.6
Cpa.g.sc141.14 Carica papaya HOM05D008433 ORTHO05D009918 3.6e-08 62.0 116 37.9
PGR031G3198 Punica granatum HOM05D008433 ORTHO05D009918 1.8e-07 59.7 80 45.0
RcHm_v2.0_Chr1g0360901 Rosa chinensis HOM05D013717 ORTHO05D009918 1.8e-07 59.7 82 45.1
ECA236G4657 Erigeron canadensis HOM05D000145 ORTHO05D000115 2.3e-07 59.3 100 39.0
Ah.05g179030 Amaranthus hybridus HOM05D008433 ORTHO05D009918 3.0e-07 58.9 78 41.0
MSTRG.20921 Avicennia marina HOM05D008433 ORTHO05D009918 4.0e-07 58.5 92 35.9
BcaNung03892 Brassica carinata HOM05D008433 ORTHO05D009918 4.0e-07 58.5 82 40.2
COL.COLO4_06213 Corchorus olitorius HOM05D008433 ORTHO05D009918 4.0e-07 58.5 98 39.8
Hma1.2p1_1697F.1_g298100 Hydrangea macrophylla HOM05D008433 ORTHO05D009918 1.2e-06 57.0 81 38.3
Sed0019953 Sechium edule HOM05D029570 ORTHO05D009918 2.0e-06 56.2 83 45.8
TAR629G1417 Trochodendron aralioides HOM05D008433 ORTHO05D009918 2.0e-06 56.2 109 33.9
CsaV3_6G008920 Cucumis sativus L. HOM05D029570 ORTHO05D009918 2.6e-06 55.8 115 35.7
MBI12_g42093_MAGBIO Magnolia biondii HOM05D008433 ORTHO05D009918 2.6e-06 55.8 89 38.2
Nitab4.5_0003094g0050 Nicotiana tabacum HOM05D018587 ORTHO05D009918 5.7e-06 54.7 109 38.5
ClCG06G002750 Citrullus lanatus HOM05D029570 ORTHO05D009918 7.5e-06 54.3 88 38.6
Nitab4.5_0002053g0010 Nicotiana tabacum HOM05D018587 ORTHO05D009918 7.5e-06 54.3 83 43.4
Prupe.2G196100 Prunus persica HOM05D013717 ORTHO05D009918 9.8e-06 53.9 87 41.4


User provided reference genes

Program Settings