Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 7.1e-40 166.8 82 100.0
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 1.1e-29 132.9 90 75.6
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 2.1e-28 128.6 83 80.7
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 2.1e-28 128.6 83 80.7
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 2.1e-28 128.6 81 76.5
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 1.8e-27 125.6 89 70.8
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 5.3e-27 124.0 90 70.0
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 5.8e-26 120.6 90 70.0
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 3.8e-25 117.9 87 72.4
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 4.9e-25 117.5 86 73.3
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 6.4e-25 117.1 85 72.9
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 9.3e-24 113.2 83 73.5
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 1.6e-23 112.5 86 70.9
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 1.6e-23 112.5 84 69.0
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 2.1e-23 112.1 86 72.1
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 2.7e-23 111.7 90 67.8
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 3.5e-23 111.3 83 71.1
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 3.5e-23 111.3 77 72.7
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.6e-23 110.9 88 67.0
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 6.0e-23 110.5 91 65.9
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 7.9e-23 110.2 84 71.4
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 1.0e-22 109.8 82 70.7
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 1.3e-22 109.4 86 68.6
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 3.0e-22 108.2 88 65.9
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 3.0e-22 108.2 88 69.3
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 3.9e-22 107.8 90 63.3
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 3.9e-22 107.8 87 66.7
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 3.9e-22 107.8 87 66.7
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 5.1e-22 107.5 62 85.5
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 5.1e-22 107.5 56 89.3
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.1e-22 107.5 56 89.3
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.1e-22 107.5 56 89.3
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.1e-22 107.5 56 89.3
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 5.1e-22 107.5 88 65.9
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 5.1e-22 107.5 56 89.3
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.7e-22 107.1 88 68.2
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 8.7e-22 106.7 85 65.9
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.1e-21 106.3 88 64.8
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 1.1e-21 106.3 77 70.1
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 1.5e-21 105.9 83 68.7
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.5e-21 105.9 89 66.3
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.5e-21 105.1 82 69.5
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.5e-21 105.1 82 69.5
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 2.5e-21 105.1 56 87.5
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 2.5e-21 105.1 91 62.6
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.6e-21 104.0 94 62.8
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 7.4e-21 103.6 82 67.1
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 7.4e-21 103.6 57 86.0
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 7.4e-21 103.6 56 85.7
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 9.6e-21 103.2 81 67.9
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 9.6e-21 103.2 55 87.3
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 9.6e-21 103.2 61 82.0
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 9.6e-21 103.2 55 87.3
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.3e-20 102.8 97 59.8
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 1.3e-20 102.8 57 82.5
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 1.6e-20 102.4 96 60.4
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 1.6e-20 102.4 91 63.7
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.6e-20 102.4 85 64.7
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 1.6e-20 102.4 97 61.9
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 2.1e-20 102.1 92 63.0
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 2.1e-20 102.1 61 80.3
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 2.8e-20 101.7 62 82.3
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 2.8e-20 101.7 94 60.6
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 2.8e-20 101.7 77 68.8
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 3.7e-20 101.3 91 63.7
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 3.7e-20 101.3 62 82.3
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 3.7e-20 101.3 78 66.7
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 4.8e-20 100.9 85 67.1
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 4.8e-20 100.9 62 82.3
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 1.1e-19 99.8 81 65.4
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 1.8e-19 99.0 92 60.9
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 1.8e-19 99.0 92 63.0
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.8e-19 99.0 53 86.8
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 2.4e-19 98.6 54 85.2
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 3.1e-19 98.2 54 85.2
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 6.9e-19 97.1 94 59.6
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 6.9e-19 97.1 82 62.2
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 6.9e-19 97.1 94 59.6
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 6.9e-19 97.1 94 59.6
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 6.9e-19 97.1 82 62.2
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 6.9e-19 97.1 55 81.8
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 2.6e-18 95.1 59 72.9
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 7.6e-18 93.6 90 55.6
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 7.6e-18 93.6 90 55.6
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 1.0e-17 93.2 70 71.4
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.7e-17 92.4 76 64.5
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 2.2e-17 92.0 71 67.6
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 6.5e-17 90.5 68 70.6
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.1e-16 89.7 76 68.4
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 1.4e-16 89.4 70 70.0
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 2.1e-15 85.5 74 63.5
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 4.6e-15 84.3 76 61.8
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.3e-14 82.8 53 81.1
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 5.1e-14 80.9 50 76.0
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 5.1e-14 80.9 71 64.8
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 6.7e-14 80.5 56 69.6
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 6.7e-14 80.5 48 81.2
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 8.7e-14 80.1 75 61.3
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 1.5e-13 79.3 68 64.7
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 1.5e-13 79.3 65 61.5
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 4.3e-13 77.8 43 86.0
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 5.7e-13 77.4 75 60.0
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 9.6e-13 76.6 50 82.0
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 1.6e-12 75.9 55 72.7
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 6.2e-12 73.9 46 78.3
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 1.4e-11 72.8 45 73.3
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 2.4e-11 72.0 79 51.9
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 3.1e-11 71.6 41 82.9
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 2.6e-10 68.6 73 52.1
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.9e-09 65.1 39 87.2
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.9e-09 65.1 39 87.2


User provided reference genes

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