Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.6e-267 924.1 496 100.0
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 8.6e-181 637.5 509 71.5
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 2.6e-169 599.4 518 65.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.7e-168 595.5 520 66.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 6.8e-154 548.1 517 62.5
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.4e-151 539.7 505 63.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-149 532.7 522 61.9
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.5e-148 530.4 520 61.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 6.9e-146 521.5 515 62.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.7e-144 516.9 508 60.6
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.6e-139 500.4 524 59.4
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 7.9e-134 481.5 526 57.8
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.3e-133 479.9 530 56.4
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 8.7e-133 478.0 525 56.8
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 5.6e-132 475.3 519 57.4
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 3.8e-128 462.6 511 55.2
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.6e-126 457.2 513 56.9
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.8e-125 453.8 495 56.4
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-125 452.2 524 53.6
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.8e-123 446.4 521 53.4
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.8e-123 446.4 527 54.3
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.2e-123 445.3 504 54.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.2e-123 444.9 528 52.7
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 8.2e-123 444.9 526 53.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.1e-122 444.5 528 52.7
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-122 444.1 528 52.5
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.1e-122 443.0 499 54.3
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.5e-121 440.7 524 52.1
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 5.8e-121 438.7 503 54.9
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 6.5e-120 435.3 485 55.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.1e-119 431.8 470 55.3
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 9.3e-119 431.4 524 53.1
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 3.0e-117 426.4 519 52.2
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 8.7e-117 424.9 473 53.9
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.3e-116 422.9 530 51.9
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.3e-116 422.9 510 51.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 4.3e-116 422.5 555 49.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.7e-116 422.2 529 51.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-115 420.6 514 51.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.8e-115 419.9 532 52.4
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.1e-114 416.0 495 53.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.0e-113 413.7 519 50.9
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.3e-112 411.0 507 53.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.2e-112 410.2 351 63.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 5.0e-112 409.1 520 51.9
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.2e-110 404.4 527 51.8
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.1e-110 403.7 530 50.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.6e-110 402.9 509 50.5
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.0e-109 401.4 511 51.9
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.3e-109 400.2 497 50.5
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 3.0e-109 399.8 493 51.3
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.7e-108 395.6 515 50.3
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 9.7e-108 394.8 555 49.0
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-107 394.4 484 53.5
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-107 394.0 498 51.8
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 2.2e-107 393.7 539 48.6
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.2e-107 393.7 510 51.4
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.7e-107 392.9 514 50.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.7e-107 392.9 513 51.9
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.1e-106 391.3 518 49.6
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.1e-106 389.8 498 51.2
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 4.1e-106 389.4 524 48.1
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 9.1e-106 388.3 512 49.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-105 387.9 528 48.5
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.5e-105 387.5 511 50.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.5e-105 387.5 498 50.6
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 3.4e-105 386.3 513 51.9
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.4e-105 386.3 490 53.3
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.4e-105 386.3 490 53.5
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.0e-104 384.8 617 44.7
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.9e-103 380.6 508 49.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.6e-102 377.5 521 47.8
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.1e-102 377.1 492 52.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 2.7e-102 376.7 505 49.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.7e-102 376.7 507 49.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 3.6e-102 376.3 495 50.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.1e-102 375.6 419 53.9
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 7.9e-102 375.2 527 46.5
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.5e-100 370.9 483 49.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 5.7e-100 369.0 495 49.1
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.7e-99 366.3 513 46.4
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 3.7e-99 366.3 502 48.0
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 6.3e-99 365.5 505 47.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.4e-98 364.4 501 47.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 3.4e-97 359.8 495 47.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 4.5e-97 359.4 503 47.1
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 5.9e-97 359.0 483 47.2
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 2.2e-96 357.1 503 48.9
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.9e-96 356.7 515 45.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.8e-96 356.3 500 46.6
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 5.0e-96 355.9 516 45.2
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 5.0e-96 355.9 494 47.0
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 6.5e-96 355.5 515 45.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.5e-96 355.5 485 46.6
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 8.5e-96 355.1 506 46.0
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 4.2e-95 352.8 494 46.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 5.5e-95 352.4 479 47.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.5e-95 352.4 491 49.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-94 351.3 479 46.8
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.1e-94 350.5 479 46.8
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.6e-94 349.7 492 49.8
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.1e-94 349.0 497 47.1
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 6.7e-93 345.5 493 48.7
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 8.8e-93 345.1 410 54.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.4e-92 342.8 488 46.9
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.7e-91 340.9 517 45.6
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 8.2e-91 338.6 333 61.6
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.4e-90 337.0 489 44.4
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 4.5e-89 332.8 490 45.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 4.5e-89 332.8 483 45.8
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.3e-88 331.3 474 45.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 3.8e-88 329.7 500 46.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.1e-87 328.2 505 44.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.1e-86 323.9 535 44.7
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-86 323.2 507 45.2
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 3.7e-83 313.2 362 53.9
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.1e-82 310.1 506 42.5
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 4.1e-82 309.7 503 44.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.1e-78 297.4 476 44.1
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.3e-77 293.9 472 41.7
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.3e-77 293.9 514 41.6
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.4e-76 290.0 381 48.6
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.3e-75 285.4 504 41.5
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.1e-74 285.0 394 48.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.1e-74 283.5 453 43.5
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.1e-74 283.1 510 41.6
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 3.5e-73 280.0 479 43.0
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.9e-73 279.3 479 43.2
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.0e-72 278.5 537 40.8
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.0e-72 276.2 468 41.9
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.2e-71 273.5 417 43.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.3e-69 267.3 415 43.9
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-68 264.6 447 42.7
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 2.0e-65 254.2 303 52.1
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.7e-65 253.8 529 38.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.4e-61 241.5 486 38.7
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 6.4e-59 232.6 371 42.3
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.4e-58 231.5 403 42.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 7.8e-57 225.7 300 50.3
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 3.9e-56 223.4 386 41.5
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.9e-53 212.2 251 53.0
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 9.2e-50 202.2 380 40.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.6e-49 199.9 386 39.4
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 6.0e-49 199.5 442 35.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.8e-49 199.1 380 40.0
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.1e-47 195.3 272 47.1
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-44 185.3 510 32.7
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 9.2e-42 175.6 230 50.0
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.0e-41 172.9 480 32.1
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.9e-39 167.9 236 47.0
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 4.6e-33 146.7 468 33.1
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.6e-32 142.9 166 53.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 8.7e-32 142.5 549 29.9
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.5e-31 141.0 458 32.8
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.0e-29 133.7 221 40.7
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.2e-28 132.1 191 47.6
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.3e-27 128.6 199 41.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.2e-27 127.9 184 41.8
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.4e-27 126.3 272 36.0
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.1e-26 122.9 219 38.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.0e-24 117.5 211 41.7
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.1e-22 111.3 299 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 9.0e-21 105.9 186 40.3
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.9e-19 100.9 139 44.6
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.4e-19 99.4 121 53.7
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.1e-18 99.0 128 53.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.4e-18 98.6 108 56.5
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.5e-17 94.0 276 36.6
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 7.9e-17 92.8 77 58.4
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.8e-14 84.3 110 44.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 7.6e-12 76.3 73 58.9
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.4e-10 72.0 81 50.6
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.6e-09 68.6 71 47.9
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 6.0e-09 66.6 51 60.8
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.0e-09 66.6 92 46.7
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 5.6e-07 60.1 92 43.5
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 2.1e-06 58.2 44 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2262 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.7e-06 57.4 166 30.1


User provided reference genes

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