Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005486 Lotus japonicus HOM05D002620 ORTHO05D006469 4.6e-52 207.6 105 100.0
LjContig00408g0009428 Lotus japonicus HOM05D002620 ORTHO05D006469 4.4e-10 68.2 41 80.5
Lj1g0015893 Lotus japonicus HOM05D002620 ORTHO05D006469 1.7e-09 66.2 41 78.0
THA.LOC104827049 Tarenaya hassleriana HOM05D002620 ORTHO05D006469 6.3e-09 64.3 42 71.4
Eucgr.A00532 Eucalyptus grandis HOM05D002620 ORTHO05D006469 1.8e-08 62.8 41 73.2
Thecc.05G013300 Theobroma cacao HOM05D002620 ORTHO05D006469 1.8e-08 62.8 42 69.0
Lalb_Chr19g0124451 Lupinus albus HOM05D002620 ORTHO05D006469 2.4e-08 62.4 41 73.2
Nn1g02057 Nelumbo nucifera HOM05D002620 ORTHO05D006469 2.4e-08 62.4 41 73.2
Lj2A72T45 Lonicera japonica HOM05D002620 ORTHO05D006469 4.1e-08 61.6 41 73.2
Psat3g126840 Pisum sativum HOM05D002620 ORTHO05D006469 4.1e-08 61.6 41 73.2
BcaC01g04208 Brassica carinata HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
BcaC05g29629 Brassica carinata HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
A05p39890 Brassica napus HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
C05p58930 Brassica napus HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
BolC5t34546H Brassica oleracea HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
BraSC256t45935Z Brassica rapa HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 73.2
QL04p017779 Quercus lobata HOM05D002620 ORTHO05D006469 5.4e-08 61.2 41 70.7
CiPaw.09G211100 Carya illinoinensis HOM05D002620 ORTHO05D006469 7.0e-08 60.8 41 68.3
PGSC0003DMG402004451 Solanum tuberosum HOM05D002620 ORTHO05D006469 7.0e-08 60.8 41 73.2
TAR623G0172 Trochodendron aralioides HOM05D002620 ORTHO05D006469 7.0e-08 60.8 41 70.7
Cpa.g.sc11.86 Carica papaya HOM05D002620 ORTHO05D006469 9.2e-08 60.5 41 68.3
Medtr7g069070 Medicago truncatula HOM05D002620 ORTHO05D006469 9.2e-08 60.5 41 70.7
Aa31LG5G18910 Aethionema arabicum HOM05D002620 ORTHO05D006469 1.2e-07 60.1 41 73.2
Gohir.A04G092500 Gossypium hirsutum HOM05D002620 ORTHO05D006469 1.2e-07 60.1 42 69.0
CSS0042358 Camellia sinensis var. sinensis HOM05D002620 ORTHO05D006469 1.6e-07 59.7 41 68.3
Gohir.D04G131800 Gossypium hirsutum HOM05D002620 ORTHO05D006469 1.6e-07 59.7 42 69.0
Gorai.012G115600 Gossypium raimondii HOM05D002620 ORTHO05D006469 1.6e-07 59.7 42 69.0
Thhalv10021214m.g Eutrema salsugineum HOM05D002620 ORTHO05D006469 2.0e-07 59.3 41 73.2
Duzib093G1276 Durio zibethinus HOM05D002620 ORTHO05D006469 2.7e-07 58.9 42 66.7
Nitab4.5_0007485g0030 Nicotiana tabacum HOM05D002620 ORTHO05D006469 2.7e-07 58.9 41 70.7
Carub.0003s0808 Capsella rubella HOM05D002620 ORTHO05D006469 3.5e-07 58.5 41 70.7
Migut.L02026 Erythranthe guttata HOM05D002620 ORTHO05D006469 3.5e-07 58.5 41 70.7
TAR636G0672 Trochodendron aralioides HOM05D002620 ORTHO05D006469 3.5e-07 58.5 41 65.9
A03p36260 Brassica napus HOM05D002620 ORTHO05D006469 4.5e-07 58.2 41 68.3
Dinv01365 Davidia involucrata HOM05D002620 ORTHO05D006469 4.5e-07 58.2 41 65.9
Solyc09g005640.3 Solanum lycopersicum HOM05D002620 ORTHO05D006469 4.5e-07 58.2 41 70.7
Sopen09g001540 Solanum pennellii HOM05D002620 ORTHO05D006469 4.5e-07 58.2 41 70.7
AL3G19970 Arabidopsis lyrata HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 70.7
CAN.G397.6 Capsicum annuum HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 68.3
Lsat_1_v5_gn_8_101621 Lactuca sativa HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 65.9
PGR004G1375 Punica granatum HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 65.9
Rhsim08G0090800 Rhododendron simsii HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 65.9
Rhsim08G0091300 Rhododendron simsii HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 65.9
TWI77G0686 Tripterygium wilfordii HOM05D002620 ORTHO05D006469 5.9e-07 57.8 41 65.9
arahy.Tifrunner.gnm1.ann1.6AU7NA Arachis hypogaea HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 70.7
MSTRG.10211 Avicennia marina HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 68.3
Cc10_g12170 Coffea canephora HOM05D002620 ORTHO05D006469 7.7e-07 57.4 56 51.8
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 7.7e-07 57.4 42 61.9
Glyma.07G152200 Glycine max HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 70.7
HanXRQChr06g0182221 Helianthus annuus HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 65.9
Phvul.008G096600 Phaseolus vulgaris HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 68.3
Hund10986 Selenicereus undatus HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 65.9
Sc22g0002540 Simmondsia chinensis HOM05D002620 ORTHO05D006469 7.7e-07 57.4 41 63.4
Aqoxy2G00103 Aquilegia oxysepala HOM05D002620 ORTHO05D006469 1.0e-06 57.0 41 63.4
C03p43900 Brassica napus HOM05D002620 ORTHO05D006469 1.0e-06 57.0 41 68.3
BraA03t12797Z Brassica rapa HOM05D002620 ORTHO05D006469 1.0e-06 57.0 41 68.3
Sp3g07370 Schrenkiella parvula HOM05D002620 ORTHO05D006469 1.0e-06 57.0 41 68.3
SGA_v2.0_scaffold240G44084 Striga asiatica HOM05D002620 ORTHO05D006469 1.0e-06 57.0 41 68.3
vmacro07605 Vaccinium macrocarpon HOM05D002620 ORTHO05D006469 1.0e-06 57.0 73 43.8
ClCG04G006940 Citrullus lanatus HOM05D002620 ORTHO05D006469 1.3e-06 56.6 41 68.3
MELO3C025997.2 Cucumis melo HOM05D002620 ORTHO05D006469 1.3e-06 56.6 41 68.3
CsaV3_4G026320 Cucumis sativus L. HOM05D002620 ORTHO05D006469 1.3e-06 56.6 41 68.3
Hma1.2p1_0362F.1_g136450 Hydrangea macrophylla HOM05D002620 ORTHO05D006469 1.3e-06 56.6 41 68.3
GSVIVG01011183001 Vitis vinifera HOM05D002620 ORTHO05D006469 1.3e-06 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.0H8BAV Arachis hypogaea HOM05D002620 ORTHO05D006469 1.7e-06 56.2 41 70.7
Ca_07656_v3 Cicer arietinum L. HOM05D002620 ORTHO05D006469 1.7e-06 56.2 41 65.9
HanXRQChr16g0508591 Helianthus annuus HOM05D002620 ORTHO05D006469 1.7e-06 56.2 77 44.2
SalBow4G1934 Salvia bowleyana HOM05D002620 ORTHO05D006469 1.7e-06 56.2 42 61.9
ATR0757G130 Amborella trichopoda HOM05D002620 ORTHO05D006469 2.3e-06 55.8 41 63.4
BolC3t16658H Brassica oleracea HOM05D002620 ORTHO05D006469 2.3e-06 55.8 41 68.3
ECA236G1932 Erigeron canadensis HOM05D002620 ORTHO05D006469 2.3e-06 55.8 41 63.4
Atru.chr8.2267 Acer truncatum HOM05D002620 ORTHO05D006469 3.8e-06 55.1 41 58.5
CARHR083290 Cardamine hirsuta HOM05D002620 ORTHO05D006469 3.8e-06 55.1 41 65.9
AT3G08950 Arabidopsis thaliana HOM05D002620 ORTHO05D006469 5.0e-06 54.7 41 65.9
CANSAT35G0894 Cannabis sativa HOM05D002620 ORTHO05D006469 5.0e-06 54.7 42 57.1
Manes.09G107200 Manihot esculenta HOM05D002620 ORTHO05D006469 5.0e-06 54.7 42 57.1
Oeu028411.1 Olea europaea HOM05D002620 ORTHO05D006469 5.0e-06 54.7 41 63.4
unitig_88.g27666 Utricularia gibba HOM05D002620 ORTHO05D006469 5.0e-06 54.7 41 61.0
AUR62030482 Chenopodium quinoa HOM05D002620 ORTHO05D006469 6.6e-06 54.3 41 61.0
Oeu038760.2 Olea europaea HOM05D002620 ORTHO05D006469 6.6e-06 54.3 41 63.4
Sed0003396 Sechium edule HOM05D002620 ORTHO05D006469 6.6e-06 54.3 41 63.4
AUR62030812 Chenopodium quinoa HOM05D002620 ORTHO05D006469 8.6e-06 53.9 41 58.5
Ciclev10012213m.g Citrus clementina HOM05D002620 ORTHO05D006469 8.6e-06 53.9 41 58.5


User provided reference genes

Program Settings