Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 6.9e-143 510.8 283 100.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 5.2e-98 361.7 300 68.0
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.8e-96 355.9 284 68.7
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 3.8e-93 345.5 302 67.5
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 9.5e-92 340.9 279 67.0
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 2.8e-91 339.3 286 67.5
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 5.9e-86 321.6 338 57.4
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 8.6e-77 291.2 272 61.0
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.8e-58 230.3 296 49.0
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 2.0e-57 226.9 296 48.3
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 4.4e-57 225.7 285 47.0
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.3e-56 224.2 271 50.6
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.9e-56 223.0 350 43.4
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 9.2e-55 218.0 278 47.5
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 2.7e-54 216.5 216 63.4
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 4.6e-54 215.7 275 48.0
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 4.6e-54 215.7 275 48.0
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.6e-54 215.7 275 48.0
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.3e-53 214.2 279 48.4
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 3.0e-53 213.0 297 47.5
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.1e-52 211.1 377 39.3
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.5e-52 210.7 292 45.2
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 3.3e-52 209.5 298 45.6
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 1.2e-51 207.6 300 44.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.1e-51 206.8 359 40.1
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.0e-50 202.6 274 46.4
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 4.4e-49 199.1 318 41.8
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.9e-48 196.4 316 41.1
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 8.4e-48 194.9 277 43.7
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.2e-47 192.6 274 45.3
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 9.3e-47 191.4 265 44.5
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 9.3e-47 191.4 295 41.7
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.6e-46 190.7 280 44.6
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-46 189.9 323 39.0
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 7.8e-46 188.3 300 39.0
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.3e-45 186.8 268 43.7
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 6.6e-45 185.3 313 39.3
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.5e-44 184.1 279 44.1
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 1.5e-44 184.1 156 66.0
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.9e-44 183.7 318 38.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 2.5e-44 183.3 286 42.0
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 2.5e-44 183.3 318 38.4
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 4.3e-44 182.6 334 38.9
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 5.6e-44 182.2 280 42.9
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 5.6e-44 182.2 321 39.6
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.3e-43 181.0 316 39.6
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.6e-43 179.5 321 39.6
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 8.1e-43 178.3 289 39.1
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.1e-42 177.9 277 41.2
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.4e-42 177.6 229 51.1
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.8e-42 177.2 277 41.2
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 6.9e-42 175.3 280 43.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 9.0e-42 174.9 342 37.7
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.5e-41 174.1 339 35.7
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 6.4e-40 168.7 276 39.5
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.9e-39 167.2 277 38.3
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 4.2e-39 166.0 302 37.7
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 7.1e-39 165.2 281 40.9
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 9.3e-39 164.9 308 40.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 3.5e-38 162.9 312 38.5
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 4.6e-38 162.5 175 58.9
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 4.3e-36 156.0 335 35.8
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 4.3e-36 156.0 280 36.1
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 4.8e-35 152.5 188 49.5
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.1e-34 151.4 274 37.6
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.2e-32 143.7 360 33.9
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 3.2e-31 139.8 357 33.1
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 9.3e-31 138.3 261 36.4
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 1.3e-29 134.4 296 37.2
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.3e-29 133.7 261 35.2
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.5e-28 131.0 292 34.9
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.3e-28 129.8 273 34.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 3.3e-28 129.8 270 34.1
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 3.7e-27 126.3 88 69.3
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 3.1e-26 123.2 274 33.9
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 2.6e-25 120.2 272 32.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 2.6e-25 120.2 272 32.7
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.0e-24 118.2 272 32.4
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.7e-24 117.5 272 32.4
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.9e-24 115.9 273 34.4
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.4e-23 114.4 279 32.3
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 1.9e-23 114.0 188 42.0
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.5e-23 113.6 117 55.6
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 2.7e-22 110.2 168 44.0
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 4.6e-22 109.4 268 31.7
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.0e-21 108.2 85 63.5
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.0e-21 108.2 268 33.6
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 5.1e-21 105.9 265 32.5
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 6.7e-21 105.5 191 38.2
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.1e-20 104.8 347 29.4
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.5e-20 104.4 270 31.5
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.5e-20 104.4 292 29.8
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 7.4e-20 102.1 277 30.0
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 3.7e-19 99.8 270 31.5
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 3.7e-19 99.8 269 32.3
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-18 97.8 140 43.6
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 1.8e-18 97.4 270 30.7
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 4.1e-18 96.3 267 31.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.6e-17 93.6 70 65.7
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 3.4e-17 93.2 270 30.4
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.0e-16 91.7 270 29.3
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 1.3e-16 91.3 156 41.0
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.7e-16 90.9 270 30.0
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 1.7e-16 90.9 124 43.5
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 3.8e-16 89.7 270 29.6
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 8.5e-16 88.6 150 40.0
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 4.6e-14 82.8 128 37.5
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.6e-14 82.8 268 28.0
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 4.6e-14 82.8 118 39.0
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 7.9e-14 82.0 213 31.9
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.4e-13 81.3 63 65.1
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.8e-13 80.9 63 65.1
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 1.5e-12 77.8 103 44.7
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 1.5e-12 77.8 145 36.6
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 4.3e-12 76.3 120 36.7
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 9.7e-12 75.1 148 35.1
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 9.7e-12 75.1 81 53.1
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.8e-11 73.6 91 46.2
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.8e-11 72.8 92 45.7
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 8.2e-11 72.0 84 41.7
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.1e-10 71.6 74 50.0
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.4e-10 70.5 91 44.0
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 2.0e-09 67.4 81 42.0
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 6.5e-08 62.4 90 34.4
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 8.5e-08 62.0 66 43.9
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 8.5e-08 62.0 97 38.1
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 1.1e-07 61.6 83 38.6
Cpa.g.sc30.64 Carica papaya HOM05D000336 ORTHO05D002705 1.9e-07 60.8 86 34.9
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.2e-07 60.1 77 39.0
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 4.2e-07 59.7 77 39.0
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 5.5e-07 59.3 85 34.1
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 5.5e-07 59.3 85 34.1
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 5.5e-07 59.3 85 34.1
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 5.5e-07 59.3 83 36.1
Gorai.011G241100 Gossypium raimondii HOM05D000336 ORTHO05D002705 1.2e-06 58.2 85 30.6
Gohir.D10G215500 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.6e-06 57.8 78 33.3
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.6e-06 57.8 89 33.7
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 2.1e-06 57.4 82 32.9
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 2.1e-06 57.4 79 38.0
MD01G1111300 Malus domestica HOM05D000336 ORTHO05D002705 2.7e-06 57.0 85 31.8
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 2.7e-06 57.0 85 32.9
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 3.6e-06 56.6 89 29.2
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 3.6e-06 56.6 76 35.5
Hund02936 Selenicereus undatus HOM05D000336 ORTHO05D002705 3.6e-06 56.6 85 32.9
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 4.7e-06 56.2 76 32.9
VMungo0464G0405 Vigna mungo HOM05D000336 ORTHO05D002705 4.7e-06 56.2 80 33.8
CANSAT54G2317 Cannabis sativa HOM05D000336 ORTHO05D002705 6.1e-06 55.8 88 30.7
CiPaw.01G275200 Carya illinoinensis HOM05D000336 ORTHO05D002705 6.1e-06 55.8 82 31.7
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 6.1e-06 55.8 80 32.5
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 6.1e-06 55.8 82 31.7
Aqoxy4G03225 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 7.9e-06 55.5 82 30.5
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 7.9e-06 55.5 139 28.8
RcHm_v2.0_Chr1g0363941 Rosa chinensis HOM05D000336 ORTHO05D002705 7.9e-06 55.5 76 32.9


User provided reference genes

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