Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 6.1e-83 310.8 165 100.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 2.2e-48 196.1 159 59.1
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 8.6e-45 184.1 161 59.0
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 3.4e-41 172.2 159 54.7
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 9.2e-39 164.1 158 53.2
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.1e-34 150.6 158 51.3
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 9.9e-33 144.1 130 56.2
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 4.9e-32 141.7 165 47.9
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 1.4e-31 140.2 161 46.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.4e-31 140.2 161 46.6
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.4e-31 140.2 161 46.0
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 4.2e-31 138.7 162 45.7
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 9.3e-31 137.5 156 49.4
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.2e-30 137.1 164 43.3
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 6.0e-30 134.8 131 55.0
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.7e-29 133.3 160 46.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.7e-29 133.3 170 42.9
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 3.0e-29 132.5 161 49.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 5.1e-29 131.7 129 49.6
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.1e-28 130.6 130 51.5
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.5e-28 129.4 130 50.8
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 5.6e-28 128.3 161 48.4
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 7.3e-28 127.9 132 52.3
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 7.3e-28 127.9 134 50.0
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 7.3e-28 127.9 162 42.6
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.6e-27 126.7 130 52.3
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 3.6e-27 125.6 136 47.1
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 4.8e-27 125.2 130 50.8
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.8e-26 123.2 131 47.3
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 2.4e-26 122.9 118 53.4
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 3.1e-26 122.5 126 50.0
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 5.3e-26 121.7 153 45.1
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 6.9e-26 121.3 124 52.4
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 6.9e-26 121.3 154 44.8
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 9.0e-26 120.9 175 40.6
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 9.0e-26 120.9 117 50.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 9.0e-26 120.9 124 48.4
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.2e-25 120.6 130 46.9
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.0e-25 119.8 131 48.1
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.0e-25 119.8 150 44.0
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.0e-25 119.8 132 48.5
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 2.6e-25 119.4 124 48.4
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.6e-25 119.4 153 43.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.6e-25 119.4 153 43.1
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 3.4e-25 119.0 136 46.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 3.4e-25 119.0 150 44.0
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 5.8e-25 118.2 168 42.3
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 5.8e-25 118.2 127 51.2
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 5.8e-25 118.2 122 52.5
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 5.8e-25 118.2 122 52.5
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 7.6e-25 117.9 157 43.3
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 9.9e-25 117.5 132 47.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.3e-24 117.1 126 53.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.7e-24 116.7 133 48.9
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.7e-24 116.7 122 52.5
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 2.2e-24 116.3 114 48.2
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 2.2e-24 116.3 136 44.1
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 2.2e-24 116.3 129 50.4
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 2.9e-24 115.9 185 38.4
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 3.8e-24 115.5 131 48.1
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 3.8e-24 115.5 115 50.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 4.9e-24 115.2 132 50.8
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 4.9e-24 115.2 131 45.8
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 4.9e-24 115.2 131 45.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 4.9e-24 115.2 130 46.2
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 6.4e-24 114.8 115 50.4
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 6.4e-24 114.8 167 39.5
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 6.4e-24 114.8 131 46.6
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 8.4e-24 114.4 123 47.2
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 8.4e-24 114.4 130 46.2
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 1.4e-23 113.6 132 44.7
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.4e-23 113.6 136 46.3
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.9e-23 113.2 117 46.2
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 3.2e-23 112.5 131 45.0
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 5.4e-23 111.7 130 41.5
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 5.4e-23 111.7 129 47.3
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 5.4e-23 111.7 69 68.1
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.1e-23 111.3 129 47.3
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 9.3e-23 110.9 132 48.5
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.2e-22 110.5 167 42.5
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.6e-22 110.2 115 48.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 2.1e-22 109.8 103 54.4
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 2.1e-22 109.8 103 54.4
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 3.5e-22 109.0 111 50.5
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 4.6e-22 108.6 111 50.5
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 4.6e-22 108.6 131 44.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 4.6e-22 108.6 146 42.5
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 6.0e-22 108.2 118 48.3
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 7.9e-22 107.8 134 46.3
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 7.9e-22 107.8 164 38.4
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.3e-21 107.1 114 47.4
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.8e-21 106.7 123 44.7
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.8e-21 106.7 114 47.4
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 5.1e-21 105.1 131 45.0
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.1e-20 104.0 114 46.5
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.5e-20 103.6 117 42.7
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 9.6e-20 100.9 152 40.8
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 9.6e-20 100.9 114 47.4
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.8e-19 99.4 116 46.6
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 3.6e-19 99.0 127 44.9
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 4.8e-19 98.6 130 40.0
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-17 93.2 132 41.7
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 2.0e-17 93.2 121 44.6
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.4e-17 92.4 107 44.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.3e-16 90.5 162 34.6
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.7e-16 90.1 144 34.7
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.2e-16 89.7 118 44.1
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.0e-13 79.3 101 37.6
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 8.4e-08 61.2 55 50.9
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.9e-07 60.1 52 55.8
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.5e-07 59.7 54 46.3
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.2e-06 57.4 54 46.3
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 2.1e-06 56.6 91 37.4


User provided reference genes

Program Settings