Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 6.4e-51 203.8 100 100.0
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-31 139.8 73 89.0
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.2e-28 129.8 78 70.5
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 2.0e-28 129.0 78 71.8
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.4e-28 128.3 78 74.4
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 9.9e-28 126.7 78 71.8
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 6.4e-27 124.0 73 75.3
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 8.4e-27 123.6 78 73.1
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-26 123.2 73 76.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.4e-26 122.9 71 77.5
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.4e-26 122.1 71 78.9
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 6.0e-25 117.5 73 71.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.3e-24 116.3 75 70.7
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.7e-24 115.9 78 66.7
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 5.1e-24 114.4 75 69.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.1e-24 114.4 70 70.0
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 5.1e-24 114.4 82 62.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 6.6e-24 114.0 70 71.4
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 8.7e-24 113.6 75 69.3
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 8.7e-24 113.6 74 67.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.1e-23 113.2 81 63.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-23 113.2 87 62.1
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.5e-23 112.1 70 75.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.3e-23 111.7 79 65.8
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.3e-23 111.3 76 65.8
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 4.3e-23 111.3 78 65.4
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 4.3e-23 111.3 77 64.9
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 4.3e-23 111.3 80 60.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 5.6e-23 110.9 70 74.3
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 5.6e-23 110.9 76 64.5
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 5.6e-23 110.9 77 63.6
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 7.3e-23 110.5 75 65.3
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 9.6e-23 110.2 78 64.1
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.1e-22 109.0 77 61.0
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 2.1e-22 109.0 84 58.3
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.1e-22 109.0 75 64.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.8e-22 108.6 70 65.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 3.6e-22 108.2 69 68.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 4.8e-22 107.8 79 63.3
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 4.8e-22 107.8 75 65.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.8e-22 107.8 70 65.7
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.2e-22 107.5 78 59.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 8.1e-22 107.1 78 62.8
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.1e-22 107.1 69 68.1
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 8.1e-22 107.1 79 64.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 8.1e-22 107.1 69 65.2
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 8.1e-22 107.1 78 59.0
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.1e-21 106.7 69 68.1
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.1e-21 106.7 78 61.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.1e-21 106.7 78 59.0
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.4e-21 106.3 78 61.5
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.4e-21 106.3 90 53.3
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.4e-21 106.3 81 59.3
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.4e-21 106.3 79 63.3
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.4e-21 106.3 78 56.4
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.8e-21 105.9 77 62.3
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.8e-21 105.9 90 53.3
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.4e-21 105.5 78 60.3
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.4e-21 105.5 69 65.2
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 2.4e-21 105.5 78 62.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.4e-21 105.5 80 60.0
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 6.9e-21 104.0 75 64.0
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 6.9e-21 104.0 70 65.7
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.2e-20 103.2 74 56.8
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.2e-20 103.2 70 65.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-20 102.4 91 51.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-20 102.4 91 51.6
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.0e-20 102.4 91 50.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.0e-20 102.4 83 54.2
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.6e-20 102.1 74 58.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.6e-20 102.1 91 50.5
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.6e-20 102.1 78 60.3
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 3.4e-20 101.7 91 52.7
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.5e-20 101.3 80 60.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 4.5e-20 101.3 78 56.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 5.8e-20 100.9 77 58.4
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.8e-20 100.9 69 63.8
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 5.8e-20 100.9 76 61.8
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 7.6e-20 100.5 74 60.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.6e-20 100.5 81 58.0
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.6e-20 100.5 81 58.0
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.6e-20 100.5 81 58.0
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.3e-19 99.8 81 55.6
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.3e-19 99.8 64 64.1
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-19 99.8 83 55.4
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-19 99.8 64 64.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.3e-19 99.8 81 56.8
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.3e-19 99.8 81 56.8
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.3e-19 99.8 78 55.1
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.3e-19 99.8 77 58.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-19 99.4 64 65.6
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.7e-19 99.4 64 65.6
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.2e-19 99.0 65 66.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 2.2e-19 99.0 69 65.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.2e-19 99.0 76 48.7
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.2e-19 99.0 79 54.4
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.9e-19 98.6 64 62.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 2.9e-19 98.6 64 62.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.9e-19 98.6 64 62.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.9e-19 98.6 81 55.6
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 3.8e-19 98.2 83 53.0
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 4.9e-19 97.8 90 47.8
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.9e-19 97.8 91 50.5
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 4.9e-19 97.8 73 63.0
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.9e-19 97.8 70 60.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.9e-19 97.8 70 60.0
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 6.4e-19 97.4 80 50.0
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 6.4e-19 97.4 90 47.8
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.1e-18 96.7 79 53.2
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-18 96.7 78 52.6
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.1e-18 96.7 90 46.7
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.4e-18 96.3 78 52.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.9e-18 95.9 81 51.9
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.4e-18 95.5 87 47.1
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 3.2e-18 95.1 64 59.4
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 4.2e-18 94.7 64 57.8
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 5.4e-18 94.4 64 57.8
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.1e-18 94.0 69 56.5
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.3e-18 93.6 69 56.5
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.2e-17 93.2 64 59.4
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.2e-17 93.2 69 56.5
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.6e-17 92.8 69 56.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 3.5e-17 91.7 78 55.1
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.6e-17 91.3 69 55.1
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 4.6e-17 91.3 69 55.1
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.3e-16 89.7 65 60.0
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.1e-15 86.7 58 65.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.1e-15 86.7 70 52.9
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.9e-15 85.9 64 56.2
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.9e-15 85.9 66 50.0
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 4.3e-15 84.7 81 46.9
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 4.3e-15 84.7 66 50.0
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 5.6e-15 84.3 78 53.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 8.1e-14 80.5 83 43.4
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 8.1e-14 80.5 68 48.5
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 8.1e-14 80.5 81 45.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.4e-13 79.0 71 46.5
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 4.0e-13 78.2 71 47.9
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.9e-13 77.4 79 44.3
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 5.5e-10 67.8 75 44.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.2e-09 66.6 68 48.5
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.7e-09 65.5 69 49.3
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.6e-09 64.7 62 53.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.0e-08 62.0 69 40.6
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 4.8e-06 54.7 67 40.3


User provided reference genes

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