Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 6.8e-174 614.0 334 100.0
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.6e-61 240.7 384 49.2
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 1.3e-60 237.7 383 48.6
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.3e-60 236.9 385 48.8
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 8.6e-60 235.0 385 47.0
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 3.3e-59 233.0 377 48.3
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 4.3e-59 232.6 386 46.4
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 1.6e-58 230.7 386 48.4
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 2.8e-58 229.9 368 50.0
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 1.4e-57 227.6 392 47.4
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.8e-57 227.3 379 46.2
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 3.1e-57 226.5 382 45.8
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 3.1e-57 226.5 384 46.6
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.1e-57 226.5 385 46.8
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 5.2e-57 225.7 377 48.3
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 2.6e-56 223.4 384 46.1
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.4e-56 223.0 302 55.3
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 5.8e-56 222.2 384 46.4
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 9.9e-56 221.5 390 46.9
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 1.7e-55 220.7 385 47.3
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 3.8e-55 219.5 382 47.1
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 3.8e-55 219.5 385 44.7
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 4.9e-55 219.2 385 47.5
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 6.4e-55 218.8 386 46.4
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 1.1e-54 218.0 372 47.6
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.9e-54 217.2 389 45.2
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.4e-54 216.9 386 46.1
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 2.4e-54 216.9 228 58.3
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.2e-54 216.5 384 46.6
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 3.2e-54 216.5 393 46.6
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 3.2e-54 216.5 386 46.6
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 5.4e-54 215.7 384 46.1
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 9.2e-54 214.9 382 45.0
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 9.2e-54 214.9 381 46.2
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 1.6e-53 214.2 386 45.3
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.6e-53 214.2 385 44.2
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 2.1e-53 213.8 383 44.9
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 2.1e-53 213.8 372 46.0
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 2.1e-53 213.8 387 46.5
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 2.1e-53 213.8 393 46.6
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.3e-52 211.1 387 44.4
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 1.3e-52 211.1 224 55.4
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 3.9e-52 209.5 384 44.8
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 8.6e-52 208.4 383 44.9
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 8.6e-52 208.4 383 43.9
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 8.6e-52 208.4 383 43.9
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 8.6e-52 208.4 383 43.9
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.1e-51 208.0 385 45.2
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 1.9e-51 207.2 383 45.2
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 3.3e-51 206.5 385 46.0
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 5.6e-51 205.7 384 45.3
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 9.6e-51 204.9 379 46.2
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 1.2e-50 204.5 384 45.1
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.6e-50 204.1 385 45.2
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 2.1e-50 203.8 383 44.6
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.1e-50 203.8 392 42.6
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 2.1e-50 203.8 384 43.0
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 2.8e-50 203.4 381 45.7
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 2.8e-50 203.4 386 45.6
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 4.7e-50 202.6 387 42.6
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 8.1e-50 201.8 382 44.2
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 1.1e-49 201.4 384 44.8
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 2.4e-49 200.3 386 44.6
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 4.0e-49 199.5 391 44.2
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 5.2e-49 199.1 387 45.0
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 6.9e-49 198.7 383 43.1
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 8.9e-49 198.4 387 42.9
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 8.9e-49 198.4 384 44.3
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.2e-48 198.0 361 45.4
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.2e-48 198.0 361 45.4
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 1.5e-48 197.6 374 45.2
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.5e-48 197.6 386 41.2
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 2.0e-48 197.2 393 43.0
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 2.0e-48 197.2 387 43.9
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.6e-48 196.8 384 43.8
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 3.4e-48 196.4 373 45.0
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 5.8e-48 195.7 240 54.2
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.7e-47 194.1 380 40.8
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.7e-47 194.1 390 42.8
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 2.2e-47 193.7 361 42.7
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.9e-47 193.4 385 44.2
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 3.8e-47 193.0 370 44.6
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 3.8e-47 193.0 370 44.1
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 6.4e-47 192.2 369 40.7
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 1.1e-46 191.4 386 42.5
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 1.4e-46 191.0 393 42.0
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 1.4e-46 191.0 393 42.0
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 2.4e-46 190.3 379 43.8
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 2.4e-46 190.3 383 41.0
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 2.4e-46 190.3 392 41.8
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 3.2e-46 189.9 387 41.6
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 4.2e-46 189.5 391 43.7
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 7.1e-46 188.7 363 40.8
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 7.1e-46 188.7 363 40.8
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 9.3e-46 188.3 389 40.9
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 9.3e-46 188.3 392 44.1
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 9.3e-46 188.3 341 45.5
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 1.2e-45 188.0 382 42.1
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 1.2e-45 188.0 383 42.6
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 2.1e-45 187.2 240 50.4
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 2.1e-45 187.2 388 41.5
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 2.1e-45 187.2 240 50.4
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 2.7e-45 186.8 387 41.3
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 2.7e-45 186.8 388 42.8
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 3.5e-45 186.4 343 44.0
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 7.8e-45 185.3 383 43.1
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 7.8e-45 185.3 235 51.9
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 7.8e-45 185.3 235 51.9
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.0e-44 184.9 384 42.2
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 1.0e-44 184.9 384 42.2
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 1.3e-44 184.5 388 43.3
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.3e-44 184.5 383 39.9
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 1.3e-44 184.5 384 41.4
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 2.3e-44 183.7 394 37.8
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 3.0e-44 183.3 388 43.0
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.0e-44 183.3 359 42.1
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.5e-43 181.0 384 43.0
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 1.5e-43 181.0 376 42.6
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 1.5e-43 181.0 389 43.2
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 1.9e-43 180.6 393 41.5
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 4.3e-43 179.5 385 41.0
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 2.1e-42 177.2 382 41.1
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-42 177.2 221 53.8
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 2.8e-42 176.8 231 49.4
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 4.8e-42 176.0 402 42.5
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 6.2e-42 175.6 368 39.1
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 6.2e-42 175.6 389 42.2
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.2e-42 175.6 385 41.3
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 6.2e-42 175.6 383 40.5
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 1.8e-41 174.1 384 40.1
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.8e-41 174.1 382 41.1
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.4e-41 173.7 366 43.7
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 9.0e-41 171.8 384 41.4
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 2.0e-40 170.6 224 48.2
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 3.4e-40 169.9 384 39.3
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.4e-40 169.9 291 43.3
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 5.8e-40 169.1 337 38.0
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 8.4e-39 165.2 396 39.9
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.4e-38 164.5 236 48.3
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 3.2e-38 163.3 382 39.3
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 9.3e-38 161.8 211 50.7
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-37 161.0 345 44.3
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.6e-34 151.0 371 39.6
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 2.8e-34 150.2 388 38.4
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 6.2e-34 149.1 386 38.1
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 1.1e-33 148.3 382 37.4
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 2.4e-33 147.1 386 38.3
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 5.3e-33 146.0 398 36.9
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.3e-31 141.4 382 37.7
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 4.9e-31 139.4 382 36.9
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.2e-30 136.3 157 49.7
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 3.0e-28 130.2 164 50.0
Os02g0294000 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 7.4e-27 125.6 210 43.3
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 2.4e-25 120.6 258 36.8
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.2e-24 118.2 123 53.7
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 2.0e-24 117.5 372 36.6
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 2.0e-24 117.5 217 41.0
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 4.5e-24 116.3 347 40.1
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.0e-23 115.2 206 41.7
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 1.2e-21 108.2 158 43.7
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 6.0e-21 105.9 332 32.8
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 1.0e-20 105.1 134 46.3
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 3.0e-20 103.6 186 43.0
Atru.chr1.1445 Acer truncatum HOM05D003466 ORTHO05D004102 7.4e-19 99.0 96 59.4
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 9.6e-19 98.6 357 31.1
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 8.2e-18 95.5 85 58.8
SMO236G0065 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 5.3e-17 92.8 79 57.0
SMO236G0087 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 5.3e-17 92.8 79 57.0
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 6.9e-17 92.4 355 34.4
SMO192G0020 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.0e-16 90.9 95 50.5
Prupe.2G026300 Prunus persica HOM05D003466 ORTHO05D004102 2.2e-15 87.4 79 59.5
Rhsim07G0175900 Rhododendron simsii HOM05D003466 ORTHO05D004102 4.2e-14 83.2 74 58.1
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.6e-13 81.3 97 54.6
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 4.6e-13 79.7 238 39.9
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 8.7e-12 75.5 279 37.3
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 5.7e-11 72.8 233 36.9
COL.COLO4_17204 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.2e-10 70.9 99 48.5
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 6.3e-10 69.3 87 50.6
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 6.3e-10 69.3 87 50.6
HanXRQChr11g0348041 Helianthus annuus HOM05D003466 ORTHO05D004102 2.0e-08 64.3 112 42.0
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 2.0e-08 64.3 111 41.4
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 8.5e-07 58.9 35 68.6
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 8.5e-07 58.9 35 68.6
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 7.2e-06 55.8 238 31.9
DCAR_031305 Daucus carota HOM05D000822 ORTHO05D008442 7.2e-06 55.8 140 36.4
vmacro20986 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 9.4e-06 55.5 118 38.1


User provided reference genes

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