Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004886 Lotus japonicus HOM05D051549 ORTHO05D000032 2.5e-96 355.5 187 100.0
Lj1g0021595 Lotus japonicus HOM05D051549 ORTHO05D000032 1.4e-70 270.0 168 86.3
Medtr7g068600 Medicago truncatula HOM05D000184 ORTHO05D000032 3.8e-57 225.3 174 71.8
Glyma.18G201800 Glycine max HOM05D000184 ORTHO05D000032 6.5e-57 224.6 172 72.1
Phvul.008G103100 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 5.2e-54 214.9 175 69.7
Psat3g129440 Pisum sativum HOM05D000184 ORTHO05D000032 9.4e-48 194.1 178 63.5
arahy.Tifrunner.gnm1.ann1.V5WQ77 Arachis hypogaea HOM05D000184 ORTHO05D000032 1.6e-34 150.2 191 53.4
arahy.Tifrunner.gnm1.ann1.Z0WZ2G Arachis hypogaea HOM05D000184 ORTHO05D000032 2.5e-32 142.9 192 51.6
PGR031G0832 Punica granatum HOM05D000184 ORTHO05D000032 2.1e-23 113.2 120 55.0
Actinidia11581 Actinidia chinensis HOM05D000544 ORTHO05D000479 2.3e-22 109.8 193 40.9
DCAR_028852 Daucus carota HOM05D000544 ORTHO05D000479 3.1e-22 109.4 194 39.7
Ciclev10013453m.g Citrus clementina HOM05D000184 ORTHO05D000032 1.5e-21 107.1 196 43.4
Duzib093G1213 Durio zibethinus HOM05D000184 ORTHO05D000032 3.4e-21 105.9 190 40.0
CSS0019219 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 4.4e-21 105.5 164 43.9
GSVIVG01011163001 Vitis vinifera HOM05D000184 ORTHO05D000032 4.9e-20 102.1 151 43.0
TWI53G0932 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.9e-19 100.1 187 40.1
QL07p035601 Quercus lobata HOM05D000184 ORTHO05D000032 3.2e-19 99.4 131 45.0
Cpa.g.c34762 Carica papaya HOM05D000184 ORTHO05D000032 4.1e-19 99.0 204 36.8
TWI74G1535 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 4.1e-19 99.0 185 41.6
Gohir.D09G161100 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.1e-19 98.2 216 35.2
Potri.016G117000 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.2e-18 97.4 197 40.1
Cc06_g01270 Coffea canephora HOM05D000184 ORTHO05D000032 3.5e-18 95.9 110 51.8
Gorai.006G182800 Gossypium raimondii HOM05D000184 ORTHO05D000032 3.5e-18 95.9 129 45.7
Aqoxy2G00876 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 4.6e-18 95.5 136 43.4
TPR.G8426 Trifolium pratense HOM05D000184 ORTHO05D000032 4.6e-18 95.5 57 86.0
Gohir.A09G165500 Gossypium hirsutum HOM05D000184 ORTHO05D000032 6.0e-18 95.1 129 45.0
TWI77G0291 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 6.0e-18 95.1 115 48.7
Atru.chr8.2251 Acer truncatum HOM05D000184 ORTHO05D000032 1.7e-17 93.6 180 39.4
Oeu029411.1 Olea europaea HOM05D000184 ORTHO05D000032 2.3e-17 93.2 114 47.4
Actinidia20737 Actinidia chinensis HOM05D000184 ORTHO05D000032 5.1e-17 92.0 173 41.0
Sopen09g001330 Solanum pennellii HOM05D000012 ORTHO05D000567 6.6e-17 91.7 163 36.2
Dinv13391 Davidia involucrata HOM05D000184 ORTHO05D000032 1.5e-16 90.5 92 53.3
FvH4_6g11361 Fragaria vesca HOM05D000184 ORTHO05D000032 2.5e-16 89.7 199 38.2
FAN14G4403 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.5e-16 89.7 199 38.2
Thecc.05G015300 Theobroma cacao HOM05D000184 ORTHO05D000032 4.3e-16 89.0 184 37.0
SalBow7G3593 Salvia bowleyana HOM05D000184 ORTHO05D000032 9.5e-16 87.8 110 47.3
PSO339G3024 Papaver somniferum HOM05D000184 ORTHO05D000032 1.6e-15 87.0 101 49.5
FAN02G4066 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.1e-15 86.7 192 37.5
Hma1.2p1_0362F.1_g136340 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 6.2e-15 85.1 195 36.4
Prupe.6G278300 Prunus persica HOM05D000184 ORTHO05D000032 1.1e-14 84.3 203 36.0
PGSC0003DMG400023079 Solanum tuberosum HOM05D000184 ORTHO05D000032 6.8e-14 81.6 145 41.4
FAN14G5163 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-13 80.9 169 39.6
Actinidia29096 Actinidia chinensis HOM05D000544 ORTHO05D000032 1.5e-13 80.5 179 35.2
Glyma.07G150850 Glycine max HOM05D000002 ORTHO05D000047 2.0e-13 80.1 55 76.4
FAN05G3166 Fragaria x ananassa HOM05D000184 ORTHO05D000032 9.9e-13 77.8 208 35.6
COL.COLO4_14528 Corchorus olitorius HOM05D000184 ORTHO05D000032 2.9e-12 76.3 127 43.3
FAN09G2474 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.1e-11 74.3 138 43.5
Manes.09G105800 Manihot esculenta HOM05D000184 ORTHO05D000032 1.4e-11 73.9 186 32.3
TAR636G3097 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.4e-11 73.9 138 39.1
DCAR_015408 Daucus carota HOM05D000184 ORTHO05D000032 2.4e-11 73.2 110 41.8
Cfa017198 Carpinus fangiana HOM05D000184 ORTHO05D000032 5.4e-11 72.0 57 61.4
QL07p019855 Quercus lobata HOM05D000184 ORTHO05D000032 9.2e-11 71.2 57 57.9
HanXRQChr12g0375411 Helianthus annuus HOM05D000184 ORTHO05D000032 1.2e-10 70.9 118 39.0
Lsat_1_v5_gn_5_150340 Lactuca sativa HOM05D000184 ORTHO05D000032 4.6e-10 68.9 119 37.8
DCAR_018701 Daucus carota HOM05D000184 ORTHO05D000032 7.8e-10 68.2 91 49.5
ECA248G3156 Erigeron canadensis HOM05D000184 ORTHO05D000032 3.9e-09 65.9 120 38.3
Migut.L02017 Erythranthe guttata HOM05D000184 ORTHO05D000032 3.9e-09 65.9 128 38.3
Potri.006G101000 Populus trichocarpa HOM05D000184 ORTHO05D000032 6.6e-09 65.1 202 33.7
EL10Ac8g20277 Beta vulgaris HOM05D000184 ORTHO05D000032 8.6e-09 64.7 79 44.3
Ah.09g233790 Amaranthus hybridus HOM05D000184 ORTHO05D000032 1.9e-08 63.5 79 43.0
SEGI_03733 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 1.9e-08 63.5 82 39.0
SEGI_41563 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 1.9e-08 63.5 82 39.0
Cfa021530 Carpinus fangiana HOM05D000184 ORTHO05D000032 4.3e-08 62.4 87 40.2
AUR62015190 Chenopodium quinoa HOM05D000184 ORTHO05D000032 4.3e-08 62.4 116 37.1
Actinidia26623 Actinidia chinensis HOM05D000184 ORTHO05D000032 5.6e-08 62.0 77 41.6
CiPaw.09G209900 Carya illinoinensis HOM05D000184 ORTHO05D000032 5.6e-08 62.0 96 42.7
Oeu028409.1 Olea europaea HOM05D000184 ORTHO05D000032 5.6e-08 62.0 114 38.6
HPP92_017862 Vanilla planifolia HOM05D000184 ORTHO05D000032 6.2e-07 58.5 95 37.9
PSO801G0639 Papaver somniferum HOM05D000184 ORTHO05D000032 1.1e-06 57.8 98 38.8
TAR633G2660 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.4e-06 57.4 51 49.0
QL05p066208 Quercus lobata HOM05D000184 ORTHO05D000032 1.8e-06 57.0 75 41.3
Sabra06G0001000 Salix brachista HOM05D000184 ORTHO05D000032 1.8e-06 57.0 75 41.3
RcHm_v2.0_Chr3g0462991 Rosa chinensis HOM05D000184 ORTHO05D000032 4.0e-06 55.8 58 51.7
PGR004G2577 Punica granatum HOM05D000184 ORTHO05D000032 6.8e-06 55.1 69 44.9


User provided reference genes

Program Settings