Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.2e-162 574.7 307 100.0
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 6.5e-155 550.8 310 95.5
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.2e-148 530.0 310 91.6
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 6.5e-147 524.2 310 91.3
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.2e-146 521.9 310 91.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.5e-143 513.1 310 88.7
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.7e-142 508.4 310 87.7
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.2e-140 503.4 310 87.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.7e-137 491.5 310 85.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.3e-136 489.2 310 85.5
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 4.9e-134 481.5 310 83.5
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-131 473.4 310 82.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.0e-131 471.5 310 81.6
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.5e-130 469.2 312 80.1
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.0e-128 463.8 310 79.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 79.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 6.8e-128 461.1 310 79.7
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.2e-127 460.3 310 78.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.3e-126 456.8 309 79.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.7e-126 456.4 310 78.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.7e-126 455.3 310 79.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 8.3e-126 454.1 310 78.4
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 5.4e-125 451.4 310 77.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 77.4
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 76.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.6e-124 449.9 310 78.4
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 3.5e-124 448.7 310 77.1
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.6e-124 448.4 310 77.7
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 4.6e-124 448.4 310 78.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.0e-123 447.2 318 75.5
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.3e-123 446.8 310 76.8
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.7e-123 446.4 310 77.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 78.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.0e-123 445.7 318 75.8
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.1e-122 443.7 310 75.8
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.5e-122 443.4 317 76.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.5e-122 443.4 317 76.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.9e-122 443.0 310 77.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 5.6e-122 441.4 310 77.1
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.3e-122 441.0 310 76.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.8e-121 439.1 310 76.1
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.8e-121 439.1 311 76.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.1e-120 437.2 310 75.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 75.5
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.4e-120 436.8 310 76.1
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-120 436.8 318 73.6
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.8e-120 436.4 310 76.1
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.3e-120 436.0 310 74.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.3e-120 436.0 319 74.0
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.3e-120 436.0 310 75.2
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 5.2e-120 434.9 310 74.5
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 5.2e-120 434.9 310 73.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.8e-120 434.5 318 73.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.8e-120 434.5 318 73.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.2e-119 433.7 318 72.3
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.0e-119 433.0 318 72.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-119 433.0 309 74.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.6e-119 432.6 362 67.1
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.4e-119 432.2 318 72.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 4.4e-119 431.8 311 74.3
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.4e-119 431.8 316 74.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 4.4e-119 431.8 318 74.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 4.4e-119 431.8 310 74.5
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 5.8e-119 431.4 318 72.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 5.8e-119 431.4 311 74.9
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.5e-119 431.0 318 75.5
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 9.8e-119 430.6 310 73.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.7e-118 429.9 311 75.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.9e-118 429.1 311 74.3
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.7e-118 428.7 318 72.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.9e-118 428.3 318 72.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-117 426.8 318 71.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.9e-117 426.4 310 73.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.2e-117 425.6 319 73.0
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 7.1e-117 424.5 318 72.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 73.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.0e-115 420.6 310 71.6
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 2.3e-115 419.5 312 71.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.1e-115 418.3 311 72.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.1e-115 418.3 345 67.2
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.5e-114 416.8 310 71.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.5e-114 416.0 318 70.8
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.2e-113 413.7 309 73.8
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.2e-111 407.1 306 71.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.6e-111 406.0 307 72.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.3e-110 403.7 310 71.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.2e-110 402.9 307 71.7
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 3.7e-110 402.1 294 73.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.7e-110 402.1 310 74.2
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 4.9e-110 401.7 294 73.8
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.4e-110 401.4 312 70.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 8.4e-110 401.0 310 69.7
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.4e-109 400.2 285 75.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.9e-109 399.8 310 70.0
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.9e-109 399.8 294 73.1
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 4.1e-109 398.7 297 72.1
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.0e-107 392.5 315 66.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.5e-106 389.4 315 66.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.3e-106 388.7 316 65.8
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 9.6e-106 387.5 278 75.9
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.7e-105 385.2 286 72.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.4e-104 383.6 286 72.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.2e-103 380.6 279 72.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.4e-103 379.0 321 65.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 9.9e-103 377.5 281 72.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.9e-102 375.9 319 68.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.9e-102 375.9 262 77.1
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 8.4e-102 374.4 311 66.6
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 8.4e-102 374.4 309 66.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.0e-99 365.9 256 76.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.5e-98 363.6 310 65.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 3.6e-97 359.0 740 38.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.4e-96 357.1 262 73.7
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.0e-96 355.5 275 69.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.6e-95 351.3 262 69.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.4e-93 346.3 310 65.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.7e-91 340.1 315 61.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.1e-91 338.6 314 62.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.6e-89 333.6 256 71.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-85 320.1 307 60.6
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.7e-83 311.6 228 72.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.0e-80 302.4 307 57.0
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 6.9e-80 301.6 221 71.5
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 3.4e-79 299.3 242 67.8
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-72 277.7 391 48.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.5e-71 273.9 315 50.8
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 4.6e-68 262.3 315 47.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 9.1e-64 248.1 309 50.2
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.6e-58 229.9 179 73.2
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 8.2e-57 224.9 286 47.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.1e-53 214.5 183 67.2
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.1e-48 198.0 246 52.4
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 9.1e-48 194.9 150 74.0
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 7.7e-47 191.8 156 69.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.5e-45 186.8 122 84.4
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.2e-45 186.0 121 86.0
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.3e-41 172.2 141 70.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.5e-37 161.0 241 44.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.0e-35 154.8 247 45.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.8e-33 146.7 115 63.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 9.1e-32 141.7 313 33.5
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 3.2e-29 133.3 124 63.7
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.5e-29 132.5 91 78.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.3e-27 127.1 110 63.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.2e-26 124.8 146 57.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.4e-24 117.1 100 61.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 7.0e-24 115.5 93 65.6
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.9e-23 112.5 89 66.3
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.6e-22 108.6 88 70.5
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.9e-15 85.9 58 72.4
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.0e-14 82.8 51 80.4
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.9e-13 80.9 397 24.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.6e-10 70.5 84 51.2
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.9e-08 64.3 120 38.3
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.3e-06 58.2 35 71.4


User provided reference genes

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