Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 4.3e-28 127.1 57 100.0
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 1.0e-21 105.9 57 84.2
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 5.1e-21 103.6 57 82.5
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 1.1e-20 102.4 57 80.7
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 1.8e-18 95.1 58 77.6
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 5.3e-18 93.6 55 78.2
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 5.3e-18 93.6 55 78.2
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 7.6e-17 89.7 60 73.3
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 4.2e-15 84.0 56 69.6
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 9.3e-15 82.8 57 68.4
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 9.3e-15 82.8 54 70.4
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.6e-14 82.0 57 68.4
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 2.7e-14 81.3 53 71.7
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 3.6e-14 80.9 54 68.5
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 6.1e-14 80.1 57 68.4
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 6.1e-14 80.1 57 68.4
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 7.9e-14 79.7 54 66.7
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 7.9e-14 79.7 58 67.2
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.8e-13 78.6 57 66.7
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 6.7e-13 76.6 45 75.6
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 8.8e-13 76.3 57 66.7
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 8.8e-13 76.3 55 63.6
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 1.1e-12 75.9 56 66.1
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.1e-12 75.9 55 63.6
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 1.5e-12 75.5 62 61.3
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 1.9e-12 75.1 55 63.6
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 1.9e-12 75.1 58 60.3
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 2.5e-12 74.7 59 64.4
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 3.3e-12 74.3 59 64.4
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 4.3e-12 73.9 55 60.0
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 1.3e-11 72.4 56 67.9
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 1.7e-11 72.0 63 61.9
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 2.8e-11 71.2 67 55.2
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 1.4e-10 68.9 72 52.8
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 1.4e-10 68.9 61 59.0
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 1.8e-10 68.6 55 63.6
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 6.9e-10 66.6 66 59.1
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.5e-09 65.5 44 65.9
Peaxi162Scf00130g01320 Petunia axillaris HOM05D008152 ORTHO05D010231 5.9e-09 63.5 46 67.4
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 5.0e-08 60.5 55 54.5
arahy.Tifrunner.gnm1.ann1.46R54Y Arachis hypogaea HOM05D008152 ORTHO05D010231 6.5e-08 60.1 44 68.2
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 1.4e-07 58.9 55 50.9
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 1.9e-07 58.5 64 53.1
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 1.9e-07 58.5 56 46.4
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 4.2e-07 57.4 57 50.9
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 7.2e-07 56.6 51 51.0
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 9.4e-07 56.2 51 56.9
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 1.6e-06 55.5 64 51.6
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 1.6e-06 55.5 64 51.6
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 3.6e-06 54.3 54 53.7
BolC3t12740H Brassica oleracea HOM05D008152 ORTHO05D010231 4.7e-06 53.9 53 49.1
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 6.1e-06 53.5 52 55.8


User provided reference genes

Program Settings