Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 8.6e-83 310.5 177 100.0
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 5.4e-29 131.7 179 59.2
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 7.1e-29 131.3 179 55.9
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 9.3e-29 131.0 190 57.4
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 6.7e-27 124.8 179 59.2
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 2.5e-26 122.9 179 57.5
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.1e-24 117.5 184 51.1
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 1.5e-23 113.6 166 57.2
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 1.8e-19 100.1 156 59.0
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 2.5e-18 96.3 193 46.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.3e-17 94.0 182 51.1
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.1e-16 90.9 190 45.8
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 2.6e-15 86.3 194 46.4
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 1.0e-14 84.3 181 43.1
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.2e-14 83.2 155 50.3
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 2.9e-14 82.8 187 46.5
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 8.4e-14 81.3 184 43.5
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 5.5e-13 78.6 175 46.3
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 9.3e-13 77.8 158 44.3
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.1e-12 76.6 155 48.4
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 3.5e-12 75.9 170 43.5
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 3.5e-12 75.9 156 48.7
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 3.5e-12 75.9 156 48.7
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 3.5e-12 75.9 159 48.4
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 3.5e-12 75.9 168 47.0
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 6.1e-12 75.1 152 46.1
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 7.9e-12 74.7 188 31.4
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 1.0e-11 74.3 143 49.0
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.0e-11 74.3 181 47.5
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.0e-11 74.3 140 50.0
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.3e-11 73.2 161 36.0
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.3e-11 73.2 156 51.9
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.3e-11 73.2 161 47.2
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.9e-11 72.4 170 45.9
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 5.1e-11 72.0 152 45.4
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 8.7e-11 71.2 175 49.1
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.1e-10 70.9 156 52.6
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.1e-10 70.9 158 51.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.5e-10 70.5 152 38.8
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.9e-10 70.1 155 42.6
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 2.5e-10 69.7 163 33.1
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 3.3e-10 69.3 163 44.8
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-10 68.9 157 40.8
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 5.7e-10 68.6 157 40.8
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.4e-10 68.2 157 38.9
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.4e-10 68.2 172 37.8
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.4e-10 68.2 172 37.8
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 1.3e-09 67.4 166 39.8
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 2.8e-09 66.2 164 47.0
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 6.3e-09 65.1 142 43.0
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 8.2e-09 64.7 143 35.0
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 8.2e-09 64.7 161 43.5
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.1e-08 64.3 151 45.7
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.8e-08 63.5 150 38.7
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.8e-08 63.5 141 51.8
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.1e-08 62.8 60 58.3
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 4.1e-08 62.4 178 46.1
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 5.3e-08 62.0 173 43.4
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 5.3e-08 62.0 164 34.1
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 5.3e-08 62.0 154 32.5
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 9.0e-08 61.2 148 32.4
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 1.2e-07 60.8 150 41.3
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 2.0e-07 60.1 150 34.7
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.0e-07 60.1 150 46.7
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 2.0e-07 60.1 139 39.6
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 3.4e-07 59.3 135 45.9
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.4e-07 59.3 147 35.4
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.5e-07 58.9 172 32.0
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 4.5e-07 58.9 156 42.3
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 4.5e-07 58.9 135 31.9
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 4.5e-07 58.9 120 33.3
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 7.7e-07 58.2 165 41.8
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 7.7e-07 58.2 134 48.5
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 1.0e-06 57.8 134 49.3
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 1.3e-06 57.4 136 47.8
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.7e-06 57.0 166 41.0
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.7e-06 57.0 166 41.0
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.7e-06 57.0 153 31.4
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 2.2e-06 56.6 166 41.0
Sed0027320 Sechium edule HOM05D026294 ORTHO05D004477 2.2e-06 56.6 134 47.0
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 2.2e-06 56.6 55 52.7
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 2.9e-06 56.2 155 38.7
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 2.9e-06 56.2 166 42.8
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 2.9e-06 56.2 47 53.2
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 2.9e-06 56.2 147 32.7
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 2.9e-06 56.2 129 45.0
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 3.8e-06 55.8 166 42.8
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 5.0e-06 55.5 130 38.5
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 8.5e-06 54.7 134 41.0
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 8.5e-06 54.7 166 30.7


User provided reference genes

Program Settings