Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004142 Lotus japonicus HOM05D006897 ORTHO05D008825 6.2e-70 267.3 131 100.0
arahy.Tifrunner.gnm1.ann1.12U4ZA Arachis hypogaea HOM05D006897 ORTHO05D008825 7.3e-55 217.2 131 80.2
Medtr7g102930 Medicago truncatula HOM05D006897 ORTHO05D008825 2.8e-54 215.3 120 83.3
Phvul.001G180700 Phaseolus vulgaris HOM05D006897 ORTHO05D008825 4.7e-54 214.5 131 78.6
VMungo1383G3501 Vigna mungo HOM05D006897 ORTHO05D008825 8.1e-54 213.8 131 78.6
Glyma.19G185800 Glycine max HOM05D006897 ORTHO05D008825 1.2e-52 209.9 131 79.4
Lalb_Chr01g0018621 Lupinus albus HOM05D006897 ORTHO05D008825 1.2e-52 209.9 132 78.8
Ca_08918_v3 Cicer arietinum L. HOM05D006897 ORTHO05D008825 6.4e-51 204.1 120 75.8
PGSC0003DMG400028283 Solanum tuberosum HOM05D006897 ORTHO05D008825 1.1e-50 203.4 125 78.4
Sopen10g033350 Solanum pennellii HOM05D006897 ORTHO05D008825 1.4e-50 203.0 125 77.6
Prupe.7G126900 Prunus persica HOM05D006897 ORTHO05D008825 1.9e-50 202.6 131 77.1
Psat3g039920 Pisum sativum HOM05D006897 ORTHO05D008825 5.4e-50 201.1 120 78.3
Medtr0050s0130 Medicago truncatula HOM05D006897 ORTHO05D008825 7.1e-50 200.7 121 79.3
Atru.chr8.1762 Acer truncatum HOM05D006897 ORTHO05D008825 2.1e-49 199.1 131 71.0
Migut.J00586 Erythranthe guttata HOM05D006897 ORTHO05D008825 2.1e-49 199.1 129 71.3
TPR.G32809 Trifolium pratense HOM05D006897 ORTHO05D008825 2.1e-49 199.1 118 80.5
Sed0006529 Sechium edule HOM05D006897 ORTHO05D008825 2.7e-49 198.7 131 75.6
CSS0029455 Camellia sinensis var. sinensis HOM05D006897 ORTHO05D008825 4.6e-49 198.0 133 70.7
Nitab4.5_0009369g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.0e-48 196.8 125 75.2
Cc06_g04460 Coffea canephora HOM05D006897 ORTHO05D008825 3.0e-48 195.3 131 71.8
Potri.006G122200 Populus trichocarpa HOM05D006897 ORTHO05D008825 3.0e-48 195.3 131 71.8
RcHm_v2.0_Chr3g0470611 Rosa chinensis HOM05D006897 ORTHO05D008825 3.9e-48 194.9 131 71.8
Lsat_1_v5_gn_6_28260 Lactuca sativa HOM05D006897 ORTHO05D008825 6.6e-48 194.1 129 71.3
Sed0016332 Sechium edule HOM05D006897 ORTHO05D008825 6.6e-48 194.1 131 71.0
TWI74G0074 Tripterygium wilfordii HOM05D006897 ORTHO05D008825 8.6e-48 193.7 131 73.3
Eucgr.A01649 Eucalyptus grandis HOM05D006897 ORTHO05D008825 1.1e-47 193.4 131 73.3
Nitab4.5_0002626g0030 Nicotiana tabacum HOM05D000468 ORTHO05D000548 1.1e-47 193.4 133 69.2
Manes.08G012300 Manihot esculenta HOM05D006897 ORTHO05D008825 1.5e-47 193.0 131 72.5
Dinv35807 Davidia involucrata HOM05D006897 ORTHO05D008825 1.9e-47 192.6 130 71.5
MD04G1090000 Malus domestica HOM05D006897 ORTHO05D008825 1.9e-47 192.6 131 71.8
MD12G1108500 Malus domestica HOM05D006897 ORTHO05D008825 2.5e-47 192.2 131 71.8
Ciclev10013772m.g Citrus clementina HOM05D006897 ORTHO05D008825 3.3e-47 191.8 125 70.4
Cfa017644 Carpinus fangiana HOM05D006897 ORTHO05D008825 4.3e-47 191.4 131 71.8
Nitab4.5_0000063g0200 Nicotiana tabacum HOM05D006897 ORTHO05D008825 5.6e-47 191.0 127 70.9
unitig_27.g25382 Utricularia gibba HOM05D006897 ORTHO05D008825 5.6e-47 191.0 129 71.3
GSVIVG01033669001 Vitis vinifera HOM05D006897 ORTHO05D008825 5.6e-47 191.0 131 70.2
CsaV3_3G036130 Cucumis sativus L. HOM05D006897 ORTHO05D008825 2.1e-46 189.1 131 73.3
ECA233G4308 Erigeron canadensis HOM05D000468 ORTHO05D000548 4.7e-46 188.0 124 71.8
Sabra06G0096400 Salix brachista HOM05D006897 ORTHO05D008825 4.7e-46 188.0 148 64.9
Gohir.D11G342700 Gossypium hirsutum HOM05D006897 ORTHO05D008825 6.2e-46 187.6 131 73.3
Gorai.007G372800 Gossypium raimondii HOM05D006897 ORTHO05D008825 6.2e-46 187.6 131 73.3
CARHR131290 Cardamine hirsuta HOM05D006897 ORTHO05D008825 1.8e-45 186.0 131 66.4
Sc02g0001520 Simmondsia chinensis HOM05D006897 ORTHO05D008825 1.8e-45 186.0 131 67.9
Aqoxy1G01120 Aquilegia oxysepala HOM05D006897 ORTHO05D008825 2.4e-45 185.7 131 68.7
Gohir.A11G323600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 3.1e-45 185.3 131 72.5
AL4G33030 Arabidopsis lyrata HOM05D006897 ORTHO05D008825 6.8e-45 184.1 131 67.9
FAN14G2109 Fragaria x ananassa HOM05D006897 ORTHO05D008825 6.8e-45 184.1 131 67.9
AT2G36835 Arabidopsis thaliana HOM05D006897 ORTHO05D008825 1.5e-44 183.0 131 67.2
CiPaw.09G169900 Carya illinoinensis HOM05D006897 ORTHO05D008825 2.0e-44 182.6 131 69.5
FvH4_6g16650 Fragaria vesca HOM05D006897 ORTHO05D008825 2.0e-44 182.6 131 67.2
FAN09G4221 Fragaria x ananassa HOM05D006897 ORTHO05D008825 2.0e-44 182.6 131 67.2
SGA_v2.0_scaffold40G15485 Striga asiatica HOM05D006897 ORTHO05D008825 2.0e-44 182.6 131 67.9
FAN05G5588 Fragaria x ananassa HOM05D006897 ORTHO05D008825 2.6e-44 182.2 131 66.4
MSTRG.5772 Avicennia marina HOM05D006897 ORTHO05D008825 3.4e-44 181.8 131 65.6
FAN05G2962 Fragaria x ananassa HOM05D006897 ORTHO05D008825 3.4e-44 181.8 131 65.6
Carub.0004s1868 Capsella rubella HOM05D006897 ORTHO05D008825 4.4e-44 181.4 131 65.6
ClCG10G019960 Citrullus lanatus HOM05D006897 ORTHO05D008825 5.8e-44 181.0 139 68.3
HanXRQChr13g0400941 Helianthus annuus HOM05D006897 ORTHO05D008825 5.8e-44 181.0 124 66.9
Solyc10g083910.3 Solanum lycopersicum HOM05D006897 ORTHO05D008825 7.6e-44 180.6 105 80.0
BcaC02g11805 Brassica carinata HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 64.9
A05p09040 Brassica napus HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 64.9
C04p11190 Brassica napus HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 64.9
BolC4t22765H Brassica oleracea HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 64.9
BraA05t19865Z Brassica rapa HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 64.9
COL.COLO4_26923 Corchorus olitorius HOM05D006897 ORTHO05D008825 9.9e-44 180.3 131 68.7
EL10Ac7g16667 Beta vulgaris HOM05D006897 ORTHO05D008825 1.3e-43 179.9 131 66.4
PSO339G3187 Papaver somniferum HOM05D006897 ORTHO05D008825 1.3e-43 179.9 131 65.6
BcaB02g09328 Brassica carinata HOM05D006897 ORTHO05D008825 1.7e-43 179.5 131 63.4
MELO3C009375.2 Cucumis melo HOM05D006897 ORTHO05D008825 2.2e-43 179.1 147 64.6
PSO063G5108 Papaver somniferum HOM05D006897 ORTHO05D008825 4.9e-43 177.9 131 65.6
Hund26628 Selenicereus undatus HOM05D006897 ORTHO05D008825 8.4e-43 177.2 131 64.9
Sp4g19090 Schrenkiella parvula HOM05D006897 ORTHO05D008825 1.1e-42 176.8 131 63.4
Thhalv10017426m.g Eutrema salsugineum HOM05D006897 ORTHO05D008825 1.4e-42 176.4 131 63.4
MBI04_g13674_MAGBIO Magnolia biondii HOM05D000468 ORTHO05D000548 1.4e-42 176.4 125 65.6
Nn2g13847 Nelumbo nucifera HOM05D006897 ORTHO05D008825 2.4e-42 175.6 131 64.9
TAR623G0762 Trochodendron aralioides HOM05D000468 ORTHO05D000548 2.4e-42 175.6 120 69.2
CDE05G1066 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 7.1e-42 174.1 119 68.1
Glyma.03G185300 Glycine max HOM05D006897 ORTHO05D008825 7.1e-42 174.1 114 73.7
AUR62026928 Chenopodium quinoa HOM05D006897 ORTHO05D008825 3.5e-41 171.8 131 66.4
QL07p042737 Quercus lobata HOM05D006897 ORTHO05D008825 3.5e-41 171.8 174 55.2
AUR62041582 Chenopodium quinoa HOM05D006897 ORTHO05D008825 4.6e-41 171.4 131 66.4
Nitab4.5_0000527g0030 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.3e-40 169.9 108 74.1
Cpa.g.sc92.100 Carica papaya HOM05D006897 ORTHO05D008825 1.7e-40 169.5 131 62.6
CDE02G4617 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 1.7e-40 169.5 119 66.4
Nn6g35243 Nelumbo nucifera HOM05D006897 ORTHO05D008825 2.3e-40 169.1 127 64.6
Oeu041483.1 Olea europaea HOM05D006897 ORTHO05D008825 4.3e-39 164.9 114 68.4
HPP92_010447 Vanilla planifolia HOM05D006897 ORTHO05D008825 3.4e-36 155.2 118 57.6
Duzib093G0551 Durio zibethinus HOM05D006897 ORTHO05D008825 7.6e-36 154.1 131 58.8
Aa31LG5G22050 Aethionema arabicum HOM05D006897 ORTHO05D008825 1.7e-35 152.9 118 61.9
HanXRQChr13g0388291 Helianthus annuus HOM05D006897 ORTHO05D008825 3.0e-32 142.1 98 65.3
HPP92_010241 Vanilla planifolia HOM05D006897 ORTHO05D008825 5.6e-31 137.9 102 57.8
Os01g0776700 Oryza sativa ssp. japonica HOM05D006897 ORTHO05D008825 9.6e-31 137.1 105 57.1
Gohir.D04G109600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 2.8e-30 135.6 107 59.8
Zm00001eb369960 Zea mays HOM05D006897 ORTHO05D008825 3.6e-30 135.2 133 48.1
Zm00001eb151640 Zea mays HOM05D006897 ORTHO05D008825 1.1e-29 133.7 133 48.9
Lj3A989T53 Lonicera japonica HOM05D006897 ORTHO05D008825 1.4e-29 133.3 96 64.6
Dinv37330 Davidia involucrata HOM05D006897 ORTHO05D000180 2.6e-28 129.0 75 78.7
Thecc.05G070500 Theobroma cacao HOM05D006897 ORTHO05D008825 3.4e-28 128.6 131 55.0
Peaxi162Scf00311g01426 Petunia axillaris HOM05D006897 ORTHO05D008825 4.5e-28 128.3 88 67.0
Gorai.009G413700 Gossypium raimondii HOM05D006897 ORTHO05D008825 9.9e-28 127.1 107 57.0
Mapoly0013s0170 Marchantia polymorpha HOM05D006897 ORTHO05D008825 3.8e-27 125.2 128 49.2
Duzib106G0008 Durio zibethinus HOM05D006897 ORTHO05D008825 6.4e-27 124.4 77 76.6
SalBow3G3382 Salvia bowleyana HOM05D006897 ORTHO05D008825 2.4e-26 122.5 131 47.3
Haze_20509 Corylus avellana HOM05D006897 ORTHO05D008825 9.3e-26 120.6 92 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4541 Anthoceros agrestis HOM05D006897 ORTHO05D008825 7.9e-25 117.5 136 44.9
AagrBONN_evm.TU.Sc2ySwM_340.262 Anthoceros agrestis HOM05D006897 ORTHO05D008825 7.9e-25 117.5 137 45.3
Pp3c2_31470 Physcomitrium patens HOM05D006897 ORTHO05D008825 1.0e-24 117.1 105 54.3
SMO134G0180 Selaginella moellendorffii HOM05D006897 ORTHO05D008825 1.3e-24 116.7 123 47.2
Rhsim04G0141800 Rhododendron simsii HOM05D006897 ORTHO05D008825 6.7e-24 114.4 79 64.6
SEGI_02421 Sequoiadendron giganteum HOM05D006897 ORTHO05D008825 8.7e-24 114.0 105 47.6
Peaxi162Scf00658g00012 Petunia axillaris HOM05D006897 ORTHO05D008825 9.6e-23 110.5 131 48.1
arahy.Tifrunner.gnm1.ann1.Y93F21 Arachis hypogaea HOM05D006897 ORTHO05D008825 1.1e-21 107.1 131 49.6
Actinidia32484 Actinidia chinensis HOM05D006897 ORTHO05D008825 1.2e-20 103.6 65 67.7
Nitab4.5_0003762g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.8e-13 79.7 63 61.9
HPP92_010165 Vanilla planifolia HOM05D006897 ORTHO05D008825 3.1e-13 79.0 63 52.4
Actinidia31321 Actinidia chinensis HOM05D006897 ORTHO05D008825 5.5e-10 68.2 59 57.6
Rhsim04G0141900 Rhododendron simsii HOM05D006897 ORTHO05D008825 2.1e-09 66.2 54 63.0
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.5e-07 59.3 43 60.5
Sabra04G0106300 Salix brachista HOM05D006897 ORTHO05D008825 2.2e-06 56.2 39 64.1


User provided reference genes

Program Settings