Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.6e-233 811.6 394 100.0
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.4e-165 586.6 394 74.4
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 8.4e-163 577.4 398 72.6
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 7.1e-162 574.3 395 73.7
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.9e-160 568.5 398 71.9
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.9e-159 566.2 399 69.9
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.3e-149 531.6 313 81.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 4.3e-143 511.9 437 59.7
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 9.6e-143 510.8 455 59.8
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 6.9e-141 504.6 441 59.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 9.9e-140 500.7 313 76.7
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 9.3e-138 494.2 448 58.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.5e-135 486.1 449 56.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.5e-135 486.1 451 57.2
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 3.3e-135 485.7 448 56.0
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 4.3e-135 485.3 444 58.3
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.2e-131 473.0 428 58.4
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.4e-130 470.3 445 55.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 4.8e-126 455.3 438 55.3
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 6.9e-125 451.4 453 51.9
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 6.9e-125 451.4 401 56.9
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.2e-124 450.7 453 53.9
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.5e-124 448.7 449 52.3
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 5.9e-124 448.4 457 53.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.3e-123 447.2 450 51.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.2e-122 441.4 453 51.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-121 440.7 455 50.8
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.6e-121 439.1 455 50.5
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.6e-121 438.7 453 50.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.3e-120 436.4 465 51.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 8.7e-120 434.5 438 54.6
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 8.7e-120 434.5 466 51.5
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.5e-119 433.7 447 51.0
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.9e-119 433.3 453 50.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.5e-119 433.0 448 51.8
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.3e-119 432.6 453 50.1
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 4.3e-119 432.2 482 49.6
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.7e-118 430.3 440 53.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.2e-118 429.9 414 53.6
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 6.9e-117 424.9 461 52.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 9.1e-117 424.5 448 52.0
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-116 424.1 456 50.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-116 424.1 456 50.9
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.3e-115 420.6 453 50.6
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.5e-115 418.3 418 51.7
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.1e-114 417.5 452 50.9
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-114 416.4 453 49.4
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 9.4e-114 414.5 451 50.1
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.2e-113 414.1 419 51.3
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 4.7e-113 412.1 414 53.1
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.3e-112 409.8 411 52.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.0e-112 409.5 428 50.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.0e-112 409.5 428 50.7
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 3.9e-112 409.1 405 52.6
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 6.7e-112 408.3 470 48.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 8.8e-112 407.9 368 58.2
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.1e-111 407.5 417 52.0
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.6e-111 406.4 298 69.1
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 4.4e-111 405.6 422 51.4
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 7.4e-111 404.8 425 52.0
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 9.7e-111 404.4 414 52.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 6.3e-110 401.7 436 49.1
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.8e-109 400.2 410 52.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.4e-109 399.8 422 51.4
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.2e-108 397.5 385 54.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.2e-108 397.5 335 59.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 7.7e-108 394.8 469 47.8
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 9.4e-106 387.9 418 50.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.7e-105 385.6 418 50.5
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.0e-104 384.4 416 50.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.8e-104 383.6 414 48.3
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 3.9e-104 382.5 376 54.8
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.5e-103 380.6 398 50.8
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.5e-103 380.6 387 53.5
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.2e-102 376.7 404 49.5
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.8e-102 376.3 397 51.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.8e-102 375.6 384 53.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 6.3e-102 375.2 424 48.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.4e-101 374.0 427 48.0
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.7e-99 367.1 366 52.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.9e-98 363.6 461 44.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.2e-97 360.9 410 48.0
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 8.0e-97 358.2 409 47.4
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.8e-96 357.1 416 48.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.3e-95 352.8 321 55.1
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 7.5e-95 351.7 424 46.0
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.7e-95 351.3 365 51.2
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.2e-94 350.1 331 57.7
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 7.0e-93 345.1 416 48.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.6e-92 344.0 416 48.1
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.6e-92 344.0 414 48.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.0e-91 339.0 476 42.4
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.2e-90 336.3 420 47.4
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.8e-88 330.5 302 58.6
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 4.0e-88 329.3 416 46.9
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.7e-86 323.9 422 46.7
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.7e-86 323.9 424 46.7
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.7e-86 323.9 425 45.4
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 3.7e-86 322.8 424 47.2
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.4e-85 318.9 419 47.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 5.0e-83 312.4 300 54.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.3e-78 297.7 504 39.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.4e-77 292.4 395 43.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.3e-75 287.0 413 46.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.5e-74 284.3 277 56.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 7.0e-69 265.4 406 41.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.0e-68 263.8 315 48.3
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.0e-67 261.5 464 35.6
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-67 261.2 431 37.6
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.4e-64 251.1 403 37.2
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-63 247.7 419 36.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 5.8e-63 245.7 322 44.4
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.2e-60 238.0 262 51.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.3e-58 229.6 509 32.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 2.0e-55 220.7 150 70.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 9.9e-55 218.4 569 28.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.4e-53 214.5 236 51.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.6e-49 201.1 328 40.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 4.2e-45 186.4 143 65.0
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-41 174.5 260 42.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-41 174.5 144 57.6
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 2.0e-39 167.5 226 42.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.8e-39 166.0 207 42.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.9e-39 165.2 207 42.5
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.5e-31 141.4 162 45.1
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 5.6e-26 122.9 94 59.6
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 9.6e-26 122.1 267 33.7
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.1e-25 120.9 210 32.9
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 6.9e-24 115.9 101 56.4
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.2e-22 110.9 151 46.4
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 4.9e-14 83.2 57 71.9
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 8.7e-11 72.4 68 54.4
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 9.0e-08 62.4 52 50.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 1.7e-06 58.2 35 71.4


User provided reference genes

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