Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1760.7 868 100.0
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1414.8 867 82.6
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1405.2 895 79.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1397.9 876 82.1
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1385.2 942 75.7
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1368.2 875 78.9
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1368.2 861 80.8
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1366.3 868 79.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1359.0 862 80.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1355.9 897 77.0
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1353.6 890 77.8
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1353.6 876 79.9
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1353.2 870 79.3
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1350.5 869 78.1
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1347.0 873 79.0
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1328.5 870 77.8
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1327.4 867 77.6
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1324.3 873 77.1
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1320.1 865 76.9
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1288.1 862 75.6
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1288.1 865 75.5
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1268.8 896 71.9
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 868 74.3
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1260.7 877 73.3
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1256.5 867 73.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 862 73.0
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 873 73.8
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1246.9 888 72.4
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 871 72.4
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1242.3 868 72.7
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1238.8 909 71.1
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1238.0 865 71.9
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 868 72.6
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 870 72.4
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 898 70.4
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1225.7 877 72.3
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1225.3 892 70.7
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1220.7 848 73.8
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1219.9 868 71.8
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1219.1 868 71.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1216.8 868 71.8
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1216.4 883 70.7
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1216.4 877 71.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1213.4 890 70.4
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 870 71.5
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1204.1 963 65.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1200.3 863 71.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1196.8 866 70.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 872 70.9
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1193.3 868 69.7
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1189.9 873 69.3
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 892 69.3
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1182.9 900 68.8
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 892 68.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1175.6 894 68.3
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1175.2 881 68.7
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 867 69.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 867 70.1
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1168.3 917 66.7
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 895 67.9
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1159.8 866 69.2
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1158.3 867 68.6
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1156.4 918 66.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1152.9 866 67.9
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1152.9 862 68.0
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 863 67.7
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 862 67.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 885 67.0
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1146.3 866 66.6
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 862 69.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 862 68.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 865 67.3
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 911 67.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 873 67.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1135.6 886 66.4
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1135.6 893 66.1
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1135.6 874 66.9
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 884 68.0
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1129.4 898 65.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 865 66.8
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 882 66.3
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1127.1 898 64.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 898 64.1
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1125.5 869 67.7
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 873 68.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 889 65.6
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 895 64.1
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1119.0 873 67.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 865 67.4
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 879 65.6
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 874 66.4
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 884 66.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 878 66.1
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 861 67.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1107.8 862 66.7
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1106.7 879 66.1
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 886 65.6
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1102.8 866 65.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1097.8 755 73.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 874 65.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 870 66.3
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1094.0 883 65.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1093.2 874 65.7
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 868 65.6
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 865 63.8
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 873 65.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 867 65.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 867 64.8
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1082.8 868 65.7
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1080.5 878 64.6
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 0.0e+00 1078.9 802 68.8
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1077.4 908 62.8
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.5e-310 1069.3 873 63.8
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 5.9e-310 1067.4 883 64.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.8e-309 1064.7 785 68.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 7.2e-308 1060.4 865 63.5
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 3.6e-307 1058.1 877 62.7
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 4.8e-304 1047.7 948 58.4
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 4.5e-302 1041.2 863 64.2
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.1e-299 1032.3 833 65.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.0e-293 1013.4 860 62.0
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.7e-288 996.1 885 60.8
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 3.8e-285 984.9 600 79.8
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.4e-284 980.3 899 58.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.0e-282 976.9 958 57.2
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.1e-279 964.9 897 57.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 2.7e-278 962.2 848 60.4
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.5e-278 961.4 583 79.8
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.2e-272 942.6 826 63.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.5e-265 919.8 881 56.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 6.4e-264 914.4 829 57.7
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.6e-257 892.5 909 54.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 7.8e-254 880.9 828 56.4
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 8.3e-248 860.9 811 56.5
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.4e-247 858.2 886 52.8
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.8e-242 841.3 805 54.3
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 7.6e-241 837.8 878 52.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.2e-238 830.5 868 53.1
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 5.2e-234 815.1 809 54.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.2e-233 813.9 874 52.2
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.1e-230 803.1 605 65.5
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 4.8e-219 765.4 573 71.2
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.6e-214 750.4 849 47.5
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.2e-208 729.9 572 62.1
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 8.2e-203 711.4 858 45.8
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.1e-199 701.0 867 44.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.6e-195 687.2 627 59.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 8.5e-192 674.9 627 58.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.0e-184 651.4 614 52.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 9.1e-178 628.2 584 57.2
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.8e-170 604.0 884 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.8e-141 505.8 568 46.3
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.5e-135 485.3 427 60.0
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.6e-132 477.2 505 54.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.1e-114 418.7 573 39.8
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.8e-113 412.5 504 46.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 6.2e-110 402.9 401 57.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.5e-105 387.1 480 48.8
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 6.4e-99 366.3 264 66.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.0e-91 342.4 698 31.7
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.6e-81 308.5 264 59.1
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.7e-80 303.1 225 64.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 7.4e-71 273.1 175 72.6
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.9e-67 261.2 520 30.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 5.9e-60 236.9 504 31.3
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.2e-58 231.1 157 72.6
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.7e-38 164.5 187 52.4
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 1.9e-34 152.1 178 48.9
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.9e-26 125.6 367 30.8
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 9.2e-21 106.7 65 75.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.3e-19 102.1 123 50.4
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 3.9e-19 101.3 73 63.0
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 6.6e-19 100.5 74 70.3
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.1e-13 83.2 74 62.2


User provided reference genes

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